Neural audio autoencoders, a deep learning method for sound synthesis, are increasingly popular in AI-enhanced NIMEs. It is timely to explore as a community how this technological opportunity has opened a domain of design in NIME. This paper focuses on one compelling technique of using autoencoders for sound synthesis: navigating their latent space as a generative sound space. We introduce Latent Terrain, a Max/MSP tool package designed to tailor latent spaces into corpus-based sound spaces for NIMEs. We describe the rationale and development process of Latent Terrain to offer insights into the use of autoencoders in a material-oriented crafting space of musical interface design. We deliver an annotated portfolio resulting from a collaborative artistic exploration of Latent Terrain with four NIME makers, to showcase the design possibilities opened by autoencoders. We reflect on our practice-based account to discuss the challenges and opportunities of enabling neural audio autoencoders as design materials for AI-enhanced NIMEs.
https://arxiv.org/abs/2611.07210
Deep learning methods for pathology are constrained by the limited availability and high cost of large-scale pixel-level annotations. Synthetic data can alleviate this limitation, but existing pipelines often lack reliable quality control and remain weakly connected to downstream analysis. To address these issues, we propose a three-stage framework that integrates automated data screening, generative representation learning, and efficient adaptation to downstream tasks. First, we develop a pathology agent system to assess image quality and filter samples, resulting in TCGA-200K, a dataset containing 217,030 pathology patches selected from the public TCGA repository. Second, we train a generative model on the screened data. In addition to image synthesis, its backbone learns structural and semantic representations that can be transferred to downstream tasks. Third, we adapt the pretrained generative backbone to semantic segmentation using a lightweight task-specific head. We further introduce PathSeg-380K, a semantic segmentation dataset with expert annotations for approximately 380,000 cells across 12 cell types. Experiments on multiple pathology datasets show that the proposed framework achieves state-of-the-art segmentation performance. Our code is publicly available at this https URL.
https://arxiv.org/abs/2611.06701
The protection of mature, multi-stage Face Recognition Systems is crucial to system providers. This technical report targets the threat model most relevant to industry practitioners: although model training is performed in-house, training data is sourced from possibly-compromised third parties. Given this setting, we present three practical defense "tricks" against data poisoning-based backdoor attacks. The first operates at training-time, detecting poisoned identities during training or prior to a pipeline's deployment. The last two operate at inference-time, filtering suspicious inputs before an answer can be sent back to a potential attacker. Each method is presented with their motivation, algorithms and computational impact, and evaluated on realistic face recognition workloads. Our goal is to provide actionable hardening techniques to system providers.
https://arxiv.org/abs/2611.06412
Deep learning can classify crop diseases accurately from benchmark leaf images, but centralized training requires farms to share raw data, and predictions without explanations offer limited support for treatment decisions. We present FedXCrop, a federated crop disease classification pipeline that quantitatively evaluates explanations of the aggregated global model. A MobileNetV2 model trained centrally on PlantVillage achieved 99.38% test accuracy (standard deviation 0.05 over three seeds) on a fixed test set of 5,428 images across 38 classes. Federated models initialized with ImageNet weights were trained for 30 rounds across five clients. FedAvg achieved 98.81% accuracy with identically distributed clients and 98.81%, 98.59%, and 97.78% under Dirichlet label skew (alpha = 1, 0.5, and 0.1, respectively). FedProx was not significantly different from FedAvg at any heterogeneity level (McNemar p > 0.3). Grad-CAM and SmoothGrad explanations were evaluated on 380 test images. Both attributed more energy to the leaf than chance (0.70-0.78 versus 0.60), while Grad-CAM maps from federated and centralized models showed Spearman correlations of 0.74-0.76. Agreement decreased as heterogeneity increased, lesion localization was only modestly above chance, and a model-randomization test indicated that SmoothGrad maps depended substantially on image structure rather than learned parameters. In this setting, label skew reduced federated accuracy by 0.6-1.6 percentage points relative to centralized training. FedAvg largely preserved Grad-CAM behavior, while FedProx provided no measurable benefit.
https://arxiv.org/abs/2611.06221
Electron microscopy (EM) serves as a cornerstone in virology enabling the visualization of viral particles and is widely used in research, diagnostics and morphological characterization of pathogens. Computer-assisted image analysis can help facilitate and speed up this labor-intensive method, however, typical EM virus datasets are small and sparsely labeled, resulting in a lack of readily available deep learning models due to training limitations. To overcome data shortages and leverage content-rich, diverse sample backgrounds, we employed background-based data augmentation. To this end, we propose Bg-Mix, a form of data augmentation method, which decomposes training images into foreground objects and backgrounds and subsequently rearranges both into novel augmented images. This not only enhances the performance of object detection models but also increases the diversity of the training data. Using Bg-Mix provides an increase between +0.8 and +3.3 box mean average precision (mAP) points over the baseline when tested across two datasets using two architectures, thereby demonstrating its effectiveness.
https://arxiv.org/abs/2611.03455
Deep learning-based super-resolution (SR) can reconstruct fine-scale Earth-observation fields from coarse observations, but reconstruction accuracy alone does not provide a calibrated rule for identifying reliable spatial regions. Conformal Mask Calibration (CMC), built on conformal risk control, converts a spatial uncertainty score into a trust mask and controls the expected worst-case local distortion under exchangeability. However, its fixed threshold can become miscalibrated in Earth-observation streams affected by seasonality and episodic events. We propose $\textit{CARM}$ (Conformal Adaptive Risk Masking), a statistical framework for adaptive spatial risk control under temporal distribution shift. CARM maintains experts with heterogeneous update rates and aggregates their threshold proposals online using an asymmetric surrogate loss, balancing rapid adaptation to distribution changes against stability during relatively stationary periods. All updates are causal and use only mature feedback available after a fixed delay, allowing CARM to operate with any SR model that provides a spatial uncertainty score. We prove that the time-averaged mask-conditioned risk converges to at most $\alpha$ at an $O(1/T)$ rate, without distributional assumptions and for any choice of aggregation weights across experts. On a daily South China Sea chlorophyll-$\textit{a}$ SR stream, CARM reduces the empirical violation rate from $43.49\%$ to $9.38\%$ and the moving-average exceedance frequency from $47.29\%$ to $1.22\%$ at $\alpha=0.10$, while retaining a non-trivial trusted region. Experiments on ERA5 wind and OSTIA sea-surface temperature further show consistent relative improvements across multiple SR backbones.
https://arxiv.org/abs/2611.06151
Protein structure prediction has largely focused on native conformations, leaving the continuum of unfolded states, folding intermediates, and native structures difficult to access. We present FoldScape, a sequence-conditioned deep learning framework for generating protein conformational ensembles at specified folding fractions $Q$. Trained on approximately one million conformations from 10,000 protein sequences, FoldScape combines coarse-grained folding and all-atom mechanical-unfolding trajectories. It reconstructs three-dimensional $C_\alpha$ chains through hierarchical sliding-window regressions of inter-residue distances, chain-level assembly, and a rectified-flow decoder. By conditioning on folding progress, FoldScape generates conformations from unfolded states through intermediates to native-state structures without protein-specific molecular dynamics at inference. In matched-sample comparisons, FoldScape achieves median conformational-space coverage of 0.989, 0.722, and 0.877 along radius of gyration, fraction of native contacts $Q$, and secondary-structure fraction, respectively, versus 0.05, 0.05, and 0.10 for seed-varied AlphaFold 3 ensembles. Coverage advantages are consistent across the evaluated proteins and robust to binning choices. Reconstruction accuracy remains approximately stable across the evaluated stages of a folding trajectory, and stride-one crop-and-superpose inference extends predictions to chains several times longer than the single-pass limit. Analyses of mechanical-unfolding trajectories show residue-resolved pathways, reproducible extension-conditioned observables across pulling velocities, and geometrically coherent segments in partially unfolded chains. FoldScape extends sequence-based structure prediction beyond a single folded endpoint to controllable conformational-ensemble generation across protein folding.
https://arxiv.org/abs/2611.04287
Accurate house price prediction is essential for real estate buyers, sellers, agents, and financial institutions. Traditional methods rely primarily on structured data, e.g., number of bedrooms, bathrooms, parkings, but they overlook rich contextual information embedded in textual descriptions and property photos. Previous deep learning approaches for house price prediction have fused multimodal data but they fall short to extract structured spatio-temporal and contextual features from texts and semantic visual information from images. In this paper, we introduce a novel multimodal framework that addresses these limitations by systematically integrating structured attributes, textual descriptions, and visual images of properties to achieve higher prediction accuracy while maintaining interpretability. We use a large language model to derive domain-specific spatio-temporal and contextual features from text, and an unsupervised vision-language approach to automatically group photos into meaningful classes like indoor, outdoor, mixed, or floorplan, that are commonly present in real-world house listings. These categories are created without manual labeling by aligning image clusters with carefully designed pseudo text prompts. We fuse all features into a unified representation and use an optimized regressor to predict prices. Experiments on a large real-world property dataset demonstrate that our method outperforms traditional methods and existing multimodal baselines. Ablation studies confirm that the novel textual feature extraction and categorized visual embeddings substantially contribute to more accurate and reliable price predictions.
https://arxiv.org/abs/2611.01615
While sentence embeddings are primarily designed for semantic generalization, their latent geometry implicitly encodes surface-level lexical properties, a relationship that remains poorly understood. Shallow pooling methods discard word order, while deep Transformer models obscure these lexical alignments behind computational complexity and uninterpretable spaces. We propose constructing sentence embeddings via the path signature of Word2Vec trajectories, leveraging the iterated integrals of rough path theory to create representations that explicitly capture sequential and lexical structure in a geometrically tractable manner. Through extensive ablations spanning Word2Vec dimensions, signature depths, and PCA compression, we correlate embedding distances against five lexical string metrics: Levenshtein, Jaro-Winkler, word Jaccard, phoneme Levenshtein, and character TF-IDF. We reveal that while average pooling almost entirely fails to capture character-level edit distances, path signatures strongly align with them, with depth 2 signatures optimally balancing character and word-level sensitivities. Furthermore, we demonstrate that the critical lexical variance is concentrated in a highly compact PCA subspace, and unlike pooling, signatures structurally preserve and quantify word order. These findings establish path signatures not as semantic generalizers, but as rigorous mathematical lenses that explicitly encode discrete lexical structures and word order, offering an interpretable alternative to opaque deep learning for lexical tracking.
https://arxiv.org/abs/2610.41855
Deep neural networks for time series classification (TSC) are trained almost exclusively by error backpropagation, which imposes update locking and the weight-transport problem. Backpropagation-free learning rules such as Direct Feedback Alignment (DFA), Direct Random Target Projection (DRTP), and the diffusion-inspired NoProp relax these constraints but have been evaluated almost exclusively on 2D image benchmarks. We adapt these three learners to univariate TSC with 1D convolutional architectures and present the first systematic study of them across 112 datasets from the UCR time series archive, with one hyperparameter-optimized configuration per method. The optimized learners reach mean F1 scores of 0.76 to 0.79, below ROCKET (0.83) and InceptionTime (0.84). We propose an analysis framework that relates the per-dataset gap to InceptionTime to dataset properties and tests convolutional feature learning by replacing the flatten readout with global average pooling, measured as a difference-in-differences (DD) against a backpropagation control on the identical architecture. Intra-class temporal variability is the dataset property most consistently associated with the gap for all three learners (partial Spearman $\rho$ from $0.28$ to $0.40$). Pooling harms DFA and DRTP more than backpropagation (DD $-0.025$ and $-0.055$), consistent with near-random convolutional features, whereas NoProp tolerates pooling as backpropagation does (DD $+0.013$). Relative to backpropagation on the same architectures, DRTP reduces training floating-point operations (FLOPs) by 33% and trains faster only on series longer than about 700 time steps, DFA yields no computational reduction, and NoProp reduces peak memory by 38% at the cost of 48% longer training.
https://arxiv.org/abs/2610.41805
Data Assimilation (DA) reconstructs the state of a spatio-temporal system by combining sensor observations with the output of a numerical model. Since model states are high-dimensional while observations cover only a small fraction of the domain, DA is a challenging large-scale estimation problem, central to weather forecasting and oceanography. Classical variational methods such as 3D-Var rely on a hand-crafted background error covariance that assumes unbiased errors, and therefore cannot capture state-dependent correlations or systematic model biases. Moreover, their cost grows with the size of the domain. Deep learning (DL) methods can perform DA and bias correction (BC) non-linearly, but typically offer limited interpretability and no calibrated uncertainty estimates. We propose a hybrid framework that couples a convolutional neural network (CNN) with a learnable-kernel Gaussian Process (GP) to jointly perform DA and BC from extremely sparse observations. The model is trained end-to-end by maximizing the marginal log-likelihood, learns a data-driven covariance over the whole grid, and provides both the Maximum A Posteriori analysis and its uncertainty by design. A patch-based strategy reduces the $O(N^3)$ training cost of exact GPs over $N$ grid points to $O(N)$ for a fixed patch size. Inference remains exact and only requires solving a linear system whose $O(m^3)$ cost depends on the number of observations $m \ll N$, not on the domain. The learned covariance can also replace the hand-crafted one in 3D-Var, improving its accuracy without changing the variational formulation. Experiments on sea surface temperature and salinity, with both synthetic and real, extremely sparse in-situ observations, show that the framework outperforms 3D-Var, a classical GP and a competing DL model, while reducing inference time by more than 98% with respect to 3D-Var.
https://arxiv.org/abs/2610.41596
Deep learning has accelerated automated atomic model building from cryo-EM maps, yet progress remains limited by the lack of large, high-quality datasets and standardized evaluation benchmarks. We address this gap by introducing CryoAtlas, a rigorously curated dataset and unified benchmark for density-guided atomic model building of protein chains. By integrating and filtering EMDB and PDB entries (up to March 2026), CryoAtlas provides 17,809 map-model-sequence entries, including a curated 16,657-entry training split. From this resource, we construct a 618-target benchmark with a shared evaluation protocol that jointly assesses structural accuracy, model-to-map fit, and stereochemical validity. Using this framework, we benchmark state-of-the-art learning-based methods against Phenix and AlphaFold3, comprehensively analyzing the impact of map resolution, sequence length, protein category and sequence identity on modeling accuracy. As a case study, retraining the ModelAngelo CNN component on CryoAtlas improves performance on the benchmark. CryoAtlas provides an open, reproducible foundation for future cryo-EM atomic model building research. Project details and resource release updates are available at this https URL.
https://arxiv.org/abs/2610.41411
Image reconstruction for positron emission tomography (PET) is a challenging inverse problem due to its inherent ill-posedness and Poisson counting noise, particularly in low-dose acquisitions. In this work, we introduce a novel Bayesian PET reconstruction framework that leverages a flow-matching generative prior learned from high-quality PET images. By incorporating this prior, we formulate PET reconstruction as a Bayesian inference problem and solve it via latent-space posterior sampling using the unadjusted Langevin algorithm. We evaluate the proposed method through numerical experiments and benchmark it against classical reconstruction methods and state-of-the-art deep learning-based baselines. The proposed method achieves improved reconstruction performance while enabling posterior uncertainty quantification.
https://arxiv.org/abs/2610.41337
Recent progress in deep learning has substantially advanced automated grading of ophthalmologic pathologies, supported by large annotated datasets and improved representation learning. However, a significant gap remains between state-of-the-art performance and clinical scalability. In particular, foundation models have reshaped image-based medical screening and diagnosis. These large-scale architectures trained on extensive datasets learn rich, generalizable feature representations that can be adapted to a wide range of downstream tasks. In ophthalmology, RETFound, one of the most relevant foundation models for retinal images, performs strongly across classification, segmentation, and risk prediction tasks. Despite their effectiveness, foundation models are often computationally prohibitive, hindering their deployment in real-world clinical environments where hardware constraints and latency are critical. To bridge this gap, we introduce CAMEL (Cross-Architecture Masked Embedding Learning), a novel cross-architecture distillation framework that uses an asymmetric masking strategy during embedding learning to effectively transfer knowledge from massive teacher foundation models to compact, lightweight student models. Our experimental evaluation across four datasets shows that CAMEL preserves accuracy while drastically reducing computational complexity, enabling lightweight yet highly accurate models suitable for resource-limited clinical settings.
https://arxiv.org/abs/2610.40954
Integrated sensing and communications (ISAC) systems using 5G and beyond signals of opportunity enable joint wireless sensing and communication using shared infrastructure and spectrum resources. While multistatic ISAC can increase sensing coverage with spatially distributed receivers, dense and dynamic clutter can significantly degrade bistatic range and Doppler estimation, leading to errors in target localization and velocity estimation. This paper presents a multistatic ISAC framework with clutter suppression for high-fidelity estimation of target position and velocity. Distributed clutter is modeled with randomly located scatterers with varying Doppler spreads and radar cross sections to capture dense and dynamic clutter effects. A broad range of conventional signal processing baselines are evaluated for clutter suppression, showing limited robustness under strong clutter conditions. To address this limitation, deep learning-based clutter suppression methods are introduced to improve robustness against dense and dynamic clutter by employing residual and attention-enhanced deep neural network architectures that directly enhance target responses from clutter-contaminated observations. These methods substantially outperform conventional approaches in target position and velocity estimation across diverse clutter conditions in multistatic ISAC.
https://arxiv.org/abs/2610.40586
This work develops a physics-informed multimodal deep learning framework for 10- to 110-minute-ahead probabilistic photovoltaic power forecasting. The forecasting model is built on a four-branch architecture that separately encodes plant-level temporal history and inverter-level spatial cloud dynamics through a graph attention encoder with a learned adjacency, known-future solar geometry, and the current meteorological state, fused through gated cross-attention. The geometry branch adds two forward-looking physical signals, spatial cloud heterogeneity and inverter ramp-down activity, each empirically weighted toward the horizon where it is most predictive. The decoder anchors its prediction to a smart persistence baseline, learning a horizon-conditioned correction, and the resulting quantile forecasts are calibrated online through a kernel-weighted adaptive conformal calibration step. The proposed model outperforms all 14 baselines, achieving a forecast skill score (FSS) of 0.2950, 0.099 above the next-best model. A branch-composition ablation shows that every branch contributes positively and the model retains substantial skill in challenging overcast and variable sky conditions (FSS 0.198 and 0.255).
https://arxiv.org/abs/2610.40418
Deep learning models for coronary vessel segmentation in X-ray angiography often perform poorly on data from centres that were not represented in training. Apart from differences in equipment, the labels of the largest public dataset (ARCADE) are incomplete, as only the segments defined in the SYNTAX score are annotated. In this study, we evaluated whether self-training with pseudo-labels can improve performance on external data without additional manual annotation. Pseudo-labels were generated from two sources, namely the predictions of an nnU-Net model trained on ARCADE and a contrast map obtained by subtracting a pre-contrast frame from the same sequence. The nnU-Net predictions were extended along the contrast map, and pixels detected only in the subtraction image were assigned an ignore label and excluded from the loss. Six models were trained and tested on ARCADE and on two external datasets (XCAD and XACV). All first-round models initialised with the baseline predictions performed better than both the baseline and a control model fine-tuned for the same number of epochs. The model trained on the XCAD pool improved the macro-averaged Dice score by 2.7 points (95% CI 2.3-3.2), while the control decreased it by 0.6 points. A second round of self-training did not lead to further improvement. When an external model trained on 50 fully annotated images was used to generate the initial labels, the XCAD Dice score increased from 0.623 to 0.745 without any XCAD labels, although performance on XACV did not improve because large main vessels were missed. These results suggest that the benefit of self-training depends largely on the sensitivity of the model used to generate the initial pseudo-labels.
https://arxiv.org/abs/2610.40302
Medium-voltage feeders have few real-time measurements, so distribution system state estimation (DSSE) rests on pseudo-measurements of the secondary substations, a prior in Bayesian terms. Weighted least squares keeps the power flow exact but reduces this prior to a mean and variance, while supervised deep learning estimators also learn the power flow and are tied to one measurement set. We propose PoSE (posterior sampling for state estimation), which keeps the Bayesian structure of DSSE and learns only what the distribution system operator does not know, namely the distribution of substation injections, modelled by a neural network trained with flow matching on historical data. The power flow equations, grid topology and measurements enter only at sampling, through a noise-aware Kalman-type correction. The neural network therefore never approximates the power flow, but every posterior sample is a physically consistent operating point, and one trained prior serves any measurement set, noise level and topology. On the IEEE 33-bus feeder, PoSE lowers the probabilistic injection error (CRPS) by 6.7-7.5% against a full-covariance Gaussian prior in all 12 tested settings. It provides reliable uncertainty: the 90% intervals contain the true injection almost exactly as often as exact posterior samples would, whereas those of supervised estimators contain it in only 37-78% of cases. On the 240-bus unbalanced three-phase Iowa feeder, it gives the lowest injection, voltage and branch-current errors of all estimators. A fast variant matches this accuracy at 0.2-0.6s per snapshot and, without retraining, beats Gaussian priors and retrained supervised estimators on seven reconfigured topologies.
https://arxiv.org/abs/2610.40728
Context: Non-determinism in deep learning algorithm design and implementation leads to performance variation, meaning model performance is not a single value, but rather a distribution. These model performance distributions are underexplored despite their impact on robustness. Objective: We investigate the robustness of deep learning performance to sources of non-determinism, specifically focusing on how performance distributions differ across various architectures and tasks. Method: We conducted 186 experiments on image classification and time series forecasting architectures. Each experiment was run 100 times with different random seeds to generate performance distributions, resulting in 18,600 runs. Robustness was quantified using metrics for spread, symmetry, and tail risk. Results: Performance distributions are frequently non-Gaussian, particularly in time series forecasting. Model size does not systematically affect robustness -- larger image classification models show fewer outliers but not lower spread, while smaller time series models show lower spread but more extreme underperformers. Training duration does not scale linearly; early stopping effectively balances performance and robustness. Mean performance does not predict robustness - time series forecasting shows moderate correlation while image classification shows none. Time series models produce nearly three times more underperforming outliers than image classification models, indicating substantially higher tail risk. Conclusions: Tail risk poses serious concerns for Trustworthy AI in high-stakes applications. Models performing well on average may exhibit long tails and extreme outliers revealed only through distributional analysis. Mean performance alone should not guide model selection; assessment of spread, symmetry, and tail risk is essential for reliable model assessment where consistent performance is critical.
https://arxiv.org/abs/2610.38037
Macromolecular pool fraction (MPF) is a quantitative imaging biomarker sensitive to myelin integrity and other changes in tissue macromolecular content, but specialized acquisitions and reconstruction methods limit its use in large-scale studies. We present a physics-guided, self-supervised deep learning framework for retrospectively estimating MPF directly from conventional clinical brain MRI ($T_1$-weighted, $T_2$-weighted, and fluid-attenuated inversion recovery [FLAIR]) without paired quantitative reference scans. The framework embeds an analytical two-pool magnetization transfer signal model that related sequence-averaged radiofrequency transmit power to apparent longitudinal relaxation. To accommodate heterogeneous clinical protocols, the network conditions intermediate features on acquisition parameters via adaptive instance normalization. It was trained and evaluated on a multisite, multivendor, multiprotocol dataset of 7,705 MRI sessions (3 T). Across 1,237 test sessions, mean MPF was $0.182 \pm 0.007$ in white matter and $0.144 \pm 0.009$ in gray matter, with limited variation across vendor-by-protocol groups (between-group coefficient of variation: 2.65% and 5.63%, respectively). In 70 sessions with demyelinating-disease labels, MPF was 35.6% lower in segmented lesions than in normal-appearing white matter. MPF maps from two different clinical protocols acquired in a healthy volunteer showed a mean voxel-wise absolute percentage difference of 7.7% and a concordance correlation coefficient of $0.888$, indicating good cross-protocol consistency. These results suggest that magnetization transfer-informed self-supervised learning enables stable MPF mapping from conventional clinical MRI, providing a scalable approach to investigate demyelinating pathology in both existing imaging archives and prospectively acquired conventional clinical scans without dedicated qMT acquisitions.
https://arxiv.org/abs/2610.37213