Document-level Relation Extraction (DocRE) aims to identify relations between entities across a document but typically relies on costly large-scale annotations. While pseudo-labelling enables the use of low-quality data, existing methods often suffer from inefficiency and confirmation bias. To address these challenges, we propose Syn2DRE, a semi-supervised framework that combines self-supervised learning with cross-supervision in a lightweight teacher-student architecture to produce more reliable pseudo-labels. Additionally, we introduce a unified end-to-end training strategy to further improve efficiency of the framework. Experiments on multiple benchmarks show that Syn2DRE consistently outperforms prior state-of-the-art semi-supervised DocRE methods.
https://arxiv.org/abs/2611.09342
Current LLM ensemble frameworks focus on multi-step setups with additional modules for answer ranking, often opting for token and span analysis rather than structured outputs, leading to heavyweight architectures with potential fail states along the pipeline. Faster, lighter solutions are more vulnerable to hallucination propagation and can lack output control in more complex pipelines. This paper proposes a customisable, lightweight ensemble workflow of coordinated Large Language Models that leverages JSON-structured outputs and anonymous peer-review ranking to mitigate hallucinatory outputs and single-model failure points. The pipeline is demonstrated on a relation extraction task applied to popular science articles in English, targeting four ontologically-grounded relation types (strong causation, weak causation, contrastive, and compositional), with semantic node canonicalisation and interactive, colour-coded HTML causal graphs as the final output. Performance is evaluated through an anonymous user study, achieving an average perceived accuracy of 0.778 against a human-annotated gold standard. The modular architecture supports flexible deployment across both API-based and in-house LLM setups, and the full framework is released under an open license to foster reproducibility and collaborative research.
https://arxiv.org/abs/2610.41901
This study investigates the effectiveness of large pre-trained language models (LLMs) for knowledge entity relation extraction (KERE) from academic papers. Existing studies have examined individual types of LLM-based strategies and evaluated model performance using metrics such as precision and recall. To provide a broader evaluation, this study investigates multiple strategies, including closed-source LLM-based CoT prompting, LoRA-adapted open-source LLMs, LLM-enhanced small pre-trained language models (SLMs), and SLM-enhanced closed-source LLMs. In addition, this study introduces two strategies, namely SLM-enhanced open-source LLMs and closed-source LLM-enhanced open-source LLMs. These strategies are evaluated from multiple perspectives, including metrics, their ability to mitigate errors observed in SLMs, and potential directions for model optimization. This study manually constructs two annotated datasets in the NLP domain, covering Abstract and Full-Text datasets. Experimental results show that the LoRA-adapted T5 model achieves the highest macro F1 scores of 0.7408 and 0.7013 on the Abstract and Full-Text datasets, respectively. SLMs also benefit from LLM-generated entity descriptions under the LLM-enhanced SLM strategy. Error analysis further reveals that the effectiveness of LLM-based strategies in mitigating SLM errors varies across error types. Based on the identified limitations and error patterns of these strategies, several optimization directions are proposed. In addition, combining strategies with different error patterns further improves KERE performance.
https://arxiv.org/abs/2610.41552
Structured semantic parsing is typically judged by whether the correct category is assigned, which leaves value recovery and instance-level associations unexamined: a system may recognize an event yet bind an argument to the wrong instance, or identify an intent yet supply an incorrect slot value. We present USP, a cross-family semantic contract that represents categories, fields, values, and instance associations through a common interface for named-entity recognition, relation extraction, event extraction, and intent-slot parsing. The contract is paired with five diagnostic matching views---category agreement, field recognition, field-value pairing, instance-bound assignment, and complete-instance recovery---that ask distinct questions about the same output. Using this contract, we normalize 61 datasets into a unified corpus with shared schemas, prompts, and matching rules, and compare six models on a fixed test subset. Our fine-tuned Xing4.0-29B-Intent attains 57.70 task-balanced Field-Value Micro-F1 (equally weighted across the four task families) and ranks first in every family and on all five views; its margin over the strongest alternative widens from 2.93 points for category matching to 20.73 points for complete-instance matching. This widening gap shows that category agreement alone understates structural deficits. USP thus offers the community a shared representation, a normalized 61-dataset corpus, and a diagnostic evaluation protocol that make structural agreement measurable and comparable across extraction and intent-slot tasks.
https://arxiv.org/abs/2610.34343
Relation extraction from aviation accident narratives is challenging because genuine safety relations are sparse among possible concept pairs. This study evaluates a decomposed framework separating relation classification from concept identification. A benchmark of 300 National Transportation Safety Board (NTSB) narratives containing 2,524 unique concept-text nodes was expanded into 21,038 ordered candidate pairs, with only 248 (1.18%) representing RESULTS_IN or CONTRIBUTES_TO relations. A TF-IDF Linear Support Vector Machine (SVM) and weighted RoBERTa classifier were developed using an independent graph-annotated resource with hard-negative sampling and frozen before sealed evaluation. Development Macro-F1 scores of 0.4738 (SVM) and 0.4809 (RoBERTa) declined to 0.2741 and 0.2420 under exhaustive evaluation, with Matthews correlation coefficients of 0.0128 and 0.0197. False positives dominated: the SVM recovered 96 reference relations but generated 7,018 false positives, while RoBERTa recovered 125 but generated 9,824. Post-test diagnostics revealed overlapping RoBERTa confidence distributions and false positives even within valid relation-category directions. Complementary end-to-end SmolLM2 evaluation identified missed and unsupported relations alongside malformed outputs. These findings demonstrate that known concept endpoints do not guarantee reliable relation extraction and that sampled-negative development performance may poorly reflect exhaustive evaluation. Controlling false positives and managing candidate-space sparsity remain essential for aviation safety knowledge extraction.
https://arxiv.org/abs/2610.27013
While LLMs demonstrate strong capabilities in English Relation Extraction (RE) tasks, a significant gap remains in assessing their RE performance in low-resource languages, due to a lack of standardized benchmarks. Creating native, language-specific annotated RE benchmarks is expensive and requires human expertise, while relying on translation yields suboptimal, inaccurate datasets that introduce English-centric biases. To tackle this, we propose a scalable, language-agnostic methodology to create RE data by denoising naturally occurring yet noisy alignments of knowledge bases and corresponding texts. We define a proper alignment via a Natural Language Inference (NLI) task, where a relation triplet is entailed by an input text. We empirically assess five denoising strategies, and demonstrate that multilingual models outperform language-specific models in the few-shot LLM setting, while Hebrew-specific encoders remain competitive under NLI fine-tuning and are strongest in the label-free cross-training setting. We further find that prompting in the native language achieves performance on par with or slightly exceeding English prompts, confirming that the pipeline operates naturally in the target language. The best open-weights model, Gemma-4-31B-it (F1\,=\,0.915), matches the best API model, GPT-5.4 (0.921), and reaches F1\,=\,0.844 on a fully held-out, dual-annotated test set. Applying the optimized pipeline, we release HeRE: a novel, massive, 1.5-million-instance silver dataset for Hebrew RE, designed to support data-intensive experimentation and model fine-tuning. HeRE bridges a critical gap in standard Hebrew RE evaluation, while providing the NLP community with a reproducible, language-agnostic pipeline for RE dataset construction in other low-resource settings.
https://arxiv.org/abs/2610.22542
Information extraction models often perform well on the datasets they are trained on, but transferring to new domains and annotation guidelines remains challenging. Supporting user-specified types alone does not resolve this problem. We present CalOn, a unified 0.6B-parameter encoder for entity, relation, and event extraction across datasets and schemas. The model jointly encodes text and type definitions, then directly identifies entity spans, relations between spans, and event triggers and arguments. Its extraction decisions consider the requested types together, using their combined evidence to identify relevant candidates before assigning a type. This gives all three tasks a common probabilistic formulation while keeping every extracted mention anchored to the input text. We train on diverse sources, and supplement supervised learning with a reward that encourages correct extractions and penalises incorrect ones. Across 40 benchmarks, CalOn outperforms the evaluated baselines on most benchmarks. It leads all reported relation extraction benchmarks and achieves the highest average F1 for event triggers and arguments with gold triggers. The same model also performs strongly on aspect sentiment triplet extraction and pronoun resolution through its span-pair formulation. A correction for the probability bias introduced during training improves confidence estimates for entities, relations, and event arguments after calibration, with little change in F1.
https://arxiv.org/abs/2610.17113
This paper details our submission to KnowledgeGraphEval 2026 Subtask 2 on directed Arabic relation extraction. We explored encoder-based and large language model approaches for predicting one of 40 relations or no_relation from an Arabic sentence and a subject-object pair. Our encoder systems use typed entity markers and separate relation-existence and relation-classification heads, while our LLM systems fine-tune Yehia and Qwen3.5 with QLoRA and ontology-constrained prediction. Our best system, an ensemble of Yehia-RE, Qwen-RE, and TypedPair, achieved a micro-F1 score of 94.06 and ranked 1st in Subtask 2. Yehia-RE (full-vocabulary) achieved 92.98, while the best encoder and Qwen-RE achieved 92.69 and 91.94 respectively. Our results highlight the importance of constrained prediction and complementary modeling approaches for Arabic relation extraction.
https://arxiv.org/abs/2610.12742
While domain-specific Large Language Models (LLMs) have encoded vast biomedical knowledge, their limited context windows often hinder a deep understanding of nuanced relationships within and across texts. To address this limitation, we introduce BioBigBird, a bidirectional language model pre-trained on extensive biomedical literature and clinical data, specifically designed to handle long-range dependencies. BioBigBird leverages a sparse attention mechanism to process sequences up to 4096 tokens, and its training incorporates a multi-stage process to mitigate noise from the large-scale pre-training corpus. We further enhance its performance by employing a multi-task learning (MTL) framework that jointly optimizes for Named Entity Recognition and Relation Extraction. Comprehensive evaluations on the BLURB benchmark reveal that our MTL-enhanced BioBigBird achieves highly competitive results against state-of-the-art models. Our work contributes an effective methodology for developing powerful, long-context language models for specialized domains, demonstrating the value of extended sequence processing for complex text analysis. Our models are publicly available at this https URL.
https://arxiv.org/abs/2610.11430
Water treatment research is expanding rapidly, but much of the knowledge acquired from this research remains scattered across unstructured literature. The field still lacks a dedicated language model that can efficiently capture water treatment-specific domain semantics for large-scale literature mining. Here, we address this by developing WaterBERT, a domain-adapted encoder model designed for semantic representation and structured information extraction from water treatment texts. WaterBERT was developed by continual pretraining on a large-scale water treatment corpus comprising about 2.97 billion tokens. Three fine-tuned models based on WaterBERT were systematically evaluated on downstream tasks, achieving the best overall performance among general-purpose and domain-specific BERT models, with F1 scores of 90.12% for multiclass treatment process classification, 79.50% for named entity recognition, and 74.04% for relation extraction. Beyond these benchmark tasks, we further demonstrated WaterBERT's advantages for large-scale literature processing. Applied to 5,144 Environmental Science & Technology articles, WaterBERT-BERTopic identified coherent, diverse, and domain-specific research topics without predefined categories. Building on WaterBERT, we processed 693,211 abstracts at substantially lower cost than commercial LLMs while retaining competitive extraction performance to construct a structured water treatment knowledge graph. The knowledge graph was then integrated with lexical and dense retrieval to develop a Water Knowledge-Enhanced Retrieval System (WaterKERS), which achieved a relevance score of 77.7, substantially outperforming text-based retrieval baselines (54.7-64.5). Through WaterBERT, this study provides a compact and scalable semantic foundation for large-scale information processing and evidence mapping in water treatment research.
https://arxiv.org/abs/2609.26034
Assembly Sequence Planning (ASP) remains a challenging problem due to its combinatorial nature, making exhaustive planning approaches impractical for complex industrial assemblies. Furthermore, many CAD models lack reliable semantic contact information or require extensive manual preprocessing, limiting the applicability of existing methods. This paper presents a hybrid ASP framework combining learning-based relation extraction with geometric-symbolic reasoning to generate feasible robotic disassembly sequences from imperfect CAD data. A neural network predicts semantic geometric relations from point clouds, while human-in-the-loop verification enables correction of uncertain predictions and planning failures. Extracted relations are transformed into a symbolic assembly graph, enabling a geometric-symbolic planner to efficiently compute locally valid sets of robotic manipulation primitives. A visibility-based ray-casting strategy guides the search for feasible disassembly directions without requiring an exhaustive combinatorial search, while the local solution space enables efficient sequence optimization. The framework is evaluated on an introduced assembly dataset and on the ASAP test dataset. On the ASAP test dataset, the proposed planner achieves an 85.83% planning success rate while reducing the median planning time by more than one order of magnitude across all assembly sizes and by more than a factor of 50 for assemblies with more than 30 components compared to the baseline. The results demonstrate that the proposed hybrid framework enables efficient robotic assembly sequence planning from imperfect CAD data while substantially reducing planning time. By combining learning-based feature segmentation, human-in-the-loop verification, and geometric-symbolic reasoning, the framework provides a practical foundation for scalable and adaptable robotic assembly and disassembly planning.
https://arxiv.org/abs/2609.17263
Structured extraction from Chinese military news supports intelligence analysis, decision-making, and knowledge base construction. However, existing resources provide limited support for joint informa?tion extraction in this domain, especially when events, event arguments, entities, and relations must be modeled together. We present CMNIE, an information extraction benchmark for Chinese military news. Extend?ing military-domain resources beyond document-level event annotations, CMNIE jointly annotates event triggers, event arguments, named enti?ties, and entity relations under a unified domain schema. The dataset contains 13,000 instances collected from public Chinese military news, with manual annotations for 7 event types, 10 argument roles, 7 entity types, and 8 relation types. We evaluate supervised IE models, zero-shot large language models, and fine-tuned LLM-based extraction methods on a shared test set. Experimental results show that CMNIE remains chal?lenging, especially for relation extraction and exact matching of event?argument spans; zero-shot LLMs often identify relevant semantic units but fail to match gold span boundaries exactly. CMNIE provides a stan?dardized benchmark for studying schema adherence, exact span match?ing, and joint structured extraction in specialized Chinese news.
https://arxiv.org/abs/2609.10722
Temporal relation extraction determines whether an event occurs before, after, or simultaneously with another event, and therefore relies on accurately modeling how the two events interact. Mainstream systems achieve this by concatenating event spans or using shallow fusion, which works well when all model parameters are trainable. However, in parameter-efficient fine-tuning, low-rank bottlenecks restrict information flow and prevent these interaction signals from passing through, leading to clear performance drops. To address this limitation, we propose a theoretically grounded architecture, Convolutional Bottleneck Interaction (CBI), which first applies lightweight depthwise convolution to enhance event representations and then uses element-wise multiplication to capture effective event-event interactions inside the bottleneck. Across five datasets and seven backbone models in the Adapter and LoRA settings, CBI provides consistent and substantial gains, up to +31.7 micro F1, while adding minimal computational cost, showing that explicit interaction inside low-rank spaces is crucial for temporal relation extraction. The code is available at this https URL.
https://arxiv.org/abs/2609.06731
The exponential growth of scientific publications calls for automatic Information Extraction (IE) systems to support knowledge discovery. In this context, the GutBrainIE benchmark evaluates Named Entity Recognition (NER), Named Entity Recognition and Disambiguation (NERD), and Relation Extraction (RE) systems in the gut-brain axis domain. We propose Two-stage Workflow for Information eXtraction (TWIX), an end-to-end IE pipeline featuring three interconnected modules, each leveraging a two-stage framework to solve all four GutBrainIE subtasks. Evaluation on the development and test sets shows that our method substantially outperforms the baseline by a wide margin, while also ranking first among all participant submissions across all subtasks. These results indicate that the proposed two-stage pipeline effectively improves both precision and recall in practical settings.
https://arxiv.org/abs/2609.00832
Hierarchical Knowledge graph (KG)-based retrieval augmented generation (RAG) has emerged as a powerful approach for supporting large language models with structured knowledge. However, there are primary challenges: (i) the lack of methods for automatic KG construction using ontology expansion for low-resource languages such as Vietnamese, (ii) the absence of systematic evaluation for knowledge retrieval strategies leveraging the hierarchical structures. In this paper, we propose an end-to-end pipeline for KG construction and retrieval strategies evaluation. In the KG construction, we employ a three-phase hybrid relation extraction pipeline: intra-batch deduplication via Union-Find, approximate cross-batch search, and LLM extraction with a centroid filter that reduces prompts combined with a five-step dual-LLM validator to prevent bloated ontology. A two-tier architecture consists of unmergeable structural nodes to preserve the document structure and mergeable content nodes. The retrieval evaluation consists of three graph traversal strategies: Top-Down, Horizontal, and Bottom-Up, which are evaluated on a synthetically generated benchmark of 1,210 Vietnamese queries from 109 subgraphs, categorized by five query directions. In this paper, we construct the tree knowledge graph from Vietnamese high school History textbooks (nearly 400 pages) to produce 750 nodes and 4,341 semantic edges with controlled ontology growth from 40 to 41 types. Among experimental graph traversal strategies, the Top-Down strategy with structure surpasses the vector baseline by 4.7 percentage points in NDCG@10. As a result, tree-structural information provides valuable information beyond flat cosine similarity but degrades performance when the query does not require structural context.
https://arxiv.org/abs/2609.00763
BioMedRAG introduced retrieval-augmented generation with a learned chunk scorer for biomedical information extraction. However, it relies on fixed-size chunking which can fragment semantic evidence. We propose a configurable semantic chunking framework that addresses this limitation by combining entity-preserving windows, trigger-centered chunking, proposition-first extraction, tiered trigger prioritization, and hierarchical relation resolution. The framework integrates with BioMedRAG by replacing only the chunk construction stage while preserving the embedding model, learned chunk scorer, generator, and evaluation protocol. We evaluate the framework on biomedical relation extraction benchmarks (GM-CIHT, DDI, ChemProt) and adverse event classification (ADE). On GM-CIHT, the full hybrid configuration achieves 82.6% F1, improving over the fixed-size baseline (74.2% F1) by 8.4 points under our experimental setup. Cross-dataset analysis shows that semantic chunking improves extraction datasets with explicit relation cues, such as GM-CIHT and DDI, while fixed chunking remains competitive or stronger for dense biochemical extraction and binary classification settings such as ChemProt and ADE. By externalizing chunking logic into configuration files, the framework provides an interpretable and adaptable alternative to rigid fixed-size chunking for biomedical RAG pipelines.
https://arxiv.org/abs/2608.31139
Malaria remains a significant global health burden, necessitating continuous research efforts to understand its complex molecular mechanisms, epidemiology, and potential therapeutic interventions. Extracting essential biomedical information from the vast and constantly growing malaria literature is a challenging task that demands innovative approaches. Recently, pre-trained language models have revolutionized natural language processing tasks, demonstrating remarkable capabilities in various domains. This paper proposes a fine-tuned pre-trained biomedical language model for biomedical information extraction from scientific literature on malaria disease. The proposed methodology selects and preprocesses a large corpus of scientific articles on malaria, and then annotates them with entities of clinical significance. It then leverages BioBERT, a state-of-the-art pre-trained language model, to encode the textual data into context-aware representations. We fine-tune the model using domain-specific annotations and supervised learning to enhance its ability to extract relevant biomedical named entities. Extensive experiments and comparisons with different encoding and machine learning algorithms show that the proposed approach significantly outperforms them in precision, recall, and accuracy. We also publish our human-labeled dataset for entity and relation extraction to enable other health informatics researchers to train advanced models for malaria information extraction.
https://arxiv.org/abs/2609.00073
Document-Level Relation Extraction (DocRE) relies heavily on costly manually annotated datasets, while large distant supervision resources such as DocRED distant remain underexploited due to noise. We show that a critical yet overlooked source of noise lies in structural inconsistencies within relational triples, including violations of ontology constraints and logical contradictions. We introduce an ontology-driven framework to quantify and enforce structural consistency in DocRE datasets. Our analysis reveals substantial structural noise in DocRED distant and demonstrates that such inconsistencies propagate to model predictions. Enforcing structural well-formedness during training significantly reduces logical contradictions and consistently improves generalization performance. These findings establish structural consistency as a missing axis of supervision in DocRE and highlight structural regularization as an effective strategy for leveraging distant data at scale.
https://arxiv.org/abs/2608.20856
This paper introduces ViTOED, a novel dataset for target-oriented emotion detection in Vietnamese social media texts. The ViTOED comprises 10,985 user comments and 21,244 manually annotated opinion quadruples (source, target, expression, polarity) that follow strict guidelines. The dataset reveals Vietnamese-specific phenomena, such as implicit sources and targets and vocabulary ambiguities, enabling deeper analysis of user emotions toward entities. We propose a baseline using structured sentiment graphs and evaluate various Vietnamese pre-trained language models. The empirical results highlight challenges in span detection and relation extraction and indicate substantial room for model improvement in Vietnamese Target-Oriented Emotion Detection tasks.
https://arxiv.org/abs/2608.12776
This work presents a unified multimodal AI system for damage assessment that integrates retrieval-augmented generation (RAG) models, thermal spectrum perception, vision foundation model pipelines, and exploratory wireless signal sensing. A RAG component is developed to ground a locally hosted language model in project-specific documentation, including specialized damage level classification criteria to mitigate hallucinations during inference. Controlled comparisons against static few-shot prompting demonstrate that dynamic retrieval improves grounding and factual consistency. We further compare vector-based RAG with a knowledge graph variant constructed via entity-relation extraction, and show that graph-based retrieval produces stronger responses for damage assessment queries requiring cross-document reasoning, motivating hybrid dense, sparse, and graph-aware retrieval. To address limitations of EO imagery under adverse lighting and weather conditions, infrared (IR)/thermal sensing is employed for object detection and segmentation. Our detectors generate candidate detections, yielding improved segmentation of a broad array of objects. Paired IR versus visible spectrum tracking experiments reveal failure modes, motivating multimodal fusion for robust object detection and damage analysis. Vision foundation and vision-language models are leveraged to generate synthetic damage imagery and classify damage severity with high accuracy, supporting training and validation of downstream damage assessment models. Finally, exploratory Wireless-based sensing demonstrates potential to detect presence, motion, and post-event environmental changes where EO and IR sensing are ineffective.
https://arxiv.org/abs/2608.08935