Threat hunting increasingly depends on converting unstructured knowledge (e.g., Cyber Threat Intelligence reports) into actionable hunt leads: concise, investigable hypotheses grounded in observable artifacts and adversary techniques. Producing such leads manually is a tedious and hard-to-scale task. Existing automated approaches stop at the entity layer, ignore the defender's operational environment, and analyze each report in isolation. To address these gaps, we introduce AHLERT, a system that automatically extracts relevant, environment-aware, and hunt leads from threat reports through (i) a hybrid retriever that combines dense vector search with multi-hop traversal over a knowledge graph seeded with MITRE ATT&CK; (ii) an ontology-grounding retrieval-augmented generation method that constrains each lead to the defender's own assets and controls; and (iii) an LLM-agnostic framework that emits structured, directly actionable leads rather than loose indicators of compromise. We evaluate AHLERT on public CTI reports for well-known APTs across multiple proprietary and open-weight models. Hybrid evidence retrieval with ontology grounding raises mean F1 by ~2x (0.44 to 0.85) over a single-route flat-RAG baseline, and AHLERT attains the highest effectiveness score (~86.95%) compared with off-the-shelf LLM models.
https://arxiv.org/abs/2609.08790
Drug repurposing aims to identify new therapeutic uses for existing compounds and, compared with de novo drug discovery, offers a faster and more cost-effective path to clinical translation. However, the space of candidate drug-disease pairs is enormous and their underlying relationships often depend on complex multi-hop biological mechanisms, making it difficult to reliably predict which pairs represent true therapeutic relationships. Existing approaches tackle this from two directions: knowledge graph-based methods organize curated biomedical evidence into structured relational networks for grounded multi-hop reasoning, while LLM-based methods leverage pretrained knowledge to generate flexible mechanistic rationales. Yet neither is sufficient alone - KGs are confined to observed graph structure while LLMs lack factual grounding and risk hallucination. To address this gap, we propose DrugReason, a multi-view reasoning framework that integrates grounded KG reasoning with LLM-generated mechanistic inference for drug repurposing. DrugReason adaptively routes diverse reasoning paths to specialized experts conditioned on the query context, while a cross-expert distillation objective enables knowledge sharing without sacrificing expert specialization. Experiments on PharmaDB, DDInter, and DrugBank show that DrugReason improves average performance over strong single-view reasoning baselines and achieves competitive or superior results compared with graph-based alternatives, while providing interpretable routing-based predictions.
https://arxiv.org/abs/2609.06779
Model upgrades are routine; memory migrations are not. An agent can keep the same memory store and still forget: a new model may interpret old notes differently, mixed embedding versions may break retrieval, and repair may fail without the original evidence. We compare memory as the same history is preserved verbatim for long-context reading (LC-RAW), divided into chunks for retrieval-augmented generation (RAG), compressed by a model into natural-language notes (NOTES), or normalized into a fixed-schema knowledge graph (KG-fixed). The study uses 48 synthetic histories with randomized answer codes, exact scoring, and two open-weight models with sub 10 billion parameters. Our measurements show that fixed-schema structures transfer reliably, with KG-fixed accuracy changing by only $+0.0004 \pm 0.0020$ following a writer swap. Conversely, compressed NOTES exhibit high model coupling, with accuracy shifting asymmetrically by $+9.91$ or $-13.28$ percentage points depending on the specific migration direction. In RAG systems, partial embedding migrations using a 50/50 mixed index capture only a 4.96-point accuracy improvement, forfeiting the majority of the 11.90-point gain achieved through full re-embedding. Diagnostic decomposition attributes 80% ($0.467 \pm 0.014$) of the NOTES accuracy deficit to information lost during initial construction, whereas retrieval failures drive 81% ($0.364 \pm 0.012$) of the RAG deficit. Finally, store-only repair of NOTES fails to reach a 90% performance recovery target in all 48 test cases, whereas retaining the raw source history enables successful recovery in 34 of 48 cases for one tested direction. These findings highlight the necessity of direction-specific migration testing, strict embedding space isolation, and the retention of source histories for memory repair.
https://arxiv.org/abs/2609.05339
Commonsense reasoning in computer vision encompasses integrating visual data and contextual knowledge, crucial for enhancing AI's understanding of everyday scenarios. This understanding not only improves machine learning models but also enhances their ability to interact meaningfully with humans and the environment. Unlike CNN-based conventional vision models, which are designed to identify objects within a specific image, incorporating commonsense knowledge enables models to interpret scenes in a more holistic manner, thereby improving their spatial ability to reason about relationships among objects and actions. This integration not only enhances object recognition but also facilitates a deeper understanding of the contextual factors, ultimately leading to more precise predictions and interactions in real-world applications. This paper presents a comprehensive survey of recent developments that integrate commonsense knowledge into computer vision tasks. We systematically review approaches based on knowledge graphs, scene graphs, neuro-symbolic models, and commonsense-augmented transformers. We also outline current limitations related to dataset bias, knowledge incompleteness, and integration challenges. Finally, we highlight prospective research trajectories in cross-modal reasoning, scalable commonsense knowledge injection, and neuro-symbolic hybrid architectures to develop truly intelligent visual systems.
https://arxiv.org/abs/2609.05257
Ambient AI is increasingly adopted in healthcare to automatically generate clinical notes from patient-clinician conversations, with the potential to substantially reduce clinician documentation burden. However, generated notes may omit clinically relevant information discussed during the encounter, creating information gaps that can affect downstream care. Knowledge graphs (KGs) constructed from encounter transcripts can provide a structured representation of what was discussed and enable systematic identification of missing information from generated notes that are critical for patient care. In this study, we introduce Coverage-Directed Revision (CDR), a model-agnostic framework that constructs a KG from the encounter transcript, identifies medical concepts absent from an initially generated note, and directs large language models (LLMs) to restore the missing information without modifying the underlying note-generation system. We evaluate CDR on two datasets: 1) Pitt-Bench, a local dataset comprising rehabilitation sessions, and 2) ACI-Bench, a public dataset for benchmarking clinical note generation. We tested four underlying LLMs widely used in ambient AI systems. The results show that CDR consistently improves content recall across all evaluated conditions. Our study provides a practical approach for improving the completeness of ambient AI-generated clinical documentation.
https://arxiv.org/abs/2609.22239
This paper studies adaptive recommendation under intent drift, where feedback from each recommendation outcome can reveal whether the relational evidence used for ranking is useful, missing, or misleading. While Knowledge Graphs (KGs) provide essential semantic structure to handle these shifts, traditional KG-enhanced systems treat the graph as a static retrieval substrate, making it brittle to evolving intents, noisy metadata, and recurring failure patterns. This paper proposes CGM-Rec, a continual graph memory framework for adaptive recommendation. CGM-Rec treats the graph state as a writable memory and maintains two complementary components. Therein, a Semantic Graph Memory is updated conservatively through quality-gated typed operations for storing stable and high-confidence relational knowledge. Meanwhile, an Episodic Lesson Memory acts as a fast reactive memory that learns recent outcomes, failure cases, and corrective hints. During testing, model parameters remain frozen and adaptation occurs only through memory writes. We evaluate CGM-Rec under a frozen-parameter, one-pass reranking protocol, where encoders and prompts remain fixed during testing and adaptation occurs only through memory writes. Experiments across multiple recommendation settings show that CGM-Rec improves over evaluated neural and LLM-based baselines on most metrics. Particularly, under sampled-candidate reranking, CGM-Rec improves HR@1 by up to 29.58% over the strongest LLM baseline on Bundle, and outperforms K-RagRec on metadata-rich ML-100K with HR@5 of 0.5941 versus 0.4746.
https://arxiv.org/abs/2609.04651
LLM-based code generation fails when correctness depends on execution-dependent coupling: the meaning of one routine is defined by the runtime behavior of another, a relationship that cannot be resolved from textual descriptions alone. This limitation, which we call static binding, is not confined to explicitly coupled problems; it appears to varying degrees whenever correctness depends on joint execution behavior across components, from explicit cross-coupled optimizers to subtler joint constraints in packing, routing, and symbolic search. This paper proposes dynamic context adaptation, a sample-efficient validation-generation loop designed for this setting. A validation agent extracts structured diagnostic information from execution traces, providing gradient-like guidance to a generation agent that proposes multiple candidates per iteration. A knowledge graph derived from the problem description supplies semantic constraints to the generation agent. Simulated annealing selects among candidates to avoid greedy collapse. Our method outperforms zero-shot, Reflexion, and OpenEvolve on seven of eight problems at both 300 and 600 evaluations (p < 0.01), a regime where population-based search has not yet accumulated sufficient diversity to compete. Notably, on the primary motivating problem (cross-coupled optimization), our method also achieves the best score at 1000 evaluations, consistent with the hypothesis that structured execution feedback is most beneficial when correctness depends on runtime coupling. Ablation results confirm that structured execution feedback is the primary driver.
https://arxiv.org/abs/2609.04570
Latent entity extraction (LEE) tackles the challenge of identifying implicit, contextually inferred entities within free text-an area where traditional entity extraction methods fall short. In this paper, we introduce LentEx, a novel framework for latent entity extraction that leverages synthetic data generation and instruction fine-tuning to optimize smaller, efficient large language models (LLMs). Latent entities, which are often abstract and thematic, are crucial for applications such as retrieval-augmented generation (RAG), customer persona analysis, and knowledge graph enrichment. LentEx addresses the scarcity of labeled datasets by employing a template-based approach to generate diverse, contextually rich synthetic data, ensuring high variability and alignment with real-world distributions. To our knowledge, LentEx is the first to systematically approach LEE through the lens of LLMs. LentEx demonstrates significant performance improvements across multiple tasks, notably surpassing state-of-the-art models on the MTEB Clustering Benchmark. Furthermore, our methodology enables robust generalization to unseen domains, making LentEx highly applicable in real-world NLP tasks, including RAG and clustering, thereby establishing a new paradigm for latent entity understanding and extraction in natural language processing.
https://arxiv.org/abs/2609.04511
We present Hakken, a domain-agnostic prediction and explanation system performing knowledge prediction, i.e., growing scientific knowledge by establishing novel relationships, ones that are not limited to the deductive hull of previous knowledge. Hakken uses a transformer-based prediction model built on temporal sequences of knowledge graphs extracted from vast bodies of research publications, fused with an LLM's semantic knowledge, to predict the presence and define the type of as-yet undocumented relationships between scientific concepts. It then calls a model-agnostic explanation framework to provide accompanying information for each prediction that allows scientists to evaluate the suggested new relationship. While general purpose, we demonstrate Hakken's practical capabilities by applying it to the biomedical domain. There, Hakken's prediction model establishes a new benchmark for time-aware multi-label relation prediction, and we show that the model's output stays coherent and informative over extended time spans in historic data. In addition, we scored 1.5 million above-confidence-threshold hypotheses related to aging, qualitatively validated batches of these predictions with biologists and progressed three of them for empirical validation in wet-lab. Two predictions with potentially significant impact in the context of drug discovery and repurposing were confirmed, introducing previously undocumented interactions between TP53 and BAMBI, and between RAF1 and TNF, to biomedical science.
https://arxiv.org/abs/2609.04494
Learning rich medical concept representations is essential for EHR prediction. Text-attributed knowledge graphs (TKGs) provide a natural foundation by organizing heterogeneous medical relations together with textual semantics. However, most existing encoders process concepts uniformly across patients, despite the fact that a code's meaning and predictive value depend on patient-specific clinical context and trajectory. Learning patient-personalized concept representations from TKGs introduces two key challenges: (1) deciding how much KG context to incorporate for each observed code, and (2) aligning semantic information with the patient-specific relational structure. We propose REFINE, a KG-aware budgeted LLM graph refinement framework for patient-personalized medical concept encoding. Starting from a global TKG, REFINE constructs patient-specific temporal graphs. A sequential reinforcement learning policy selects a personalized KG expansion budget for each observed code. The resulting patient graph is processed by a heterogeneous GNN to capture relation-aware structural dependencies, while a frozen LLM uses graph-aware soft prompts to semantically refine concept representations. Experiments on MIMIC-III and MIMIC-IV show that REFINE consistently improves diverse EHR backbones, outperforms strong baselines, and demonstrates robust gains across component ablation, KG selection, and data insufficiency.
https://arxiv.org/abs/2609.04415
Enterprise AI deployments fail not from model inadequacy, but because organizations lack a structured substrate encoding how they decide, negotiate, and execute. Generic LLMs carry no firm-specific ontological priors; RAG remains brittle, with no path to executable action; static playbooks encode logic but cannot reason or adapt. This demands an architecture treating tacit-knowledge capture, ontological grounding, sovereign deployment, and auditable actuation as co-designed from the start. This paper introduces the Corporate Language Model (CLM), a framework transforming a firm's structured, unstructured, multimodal, and tacit knowledge into an ontology-grounded enterprise foundation upon which reasoning and governed execution are composed. CLM has five capability planes and four architectural pillars: a Neurosymbolic Mesh coupling generative models with a knowledge graph; a Skill Graph where reusable tactics, personas, objections, and goals are typed and composed; Living Digital Twins modeling functional areas as reasoning surrogates; and a Deep Security Layer enforcing sovereignty, traceability, and human oversight. A Spec-as-Code paradigm bridges grounded intent and executable artifact. CLM is one instantiation of this foundation-centric class. Four contributions follow: CLM is defined as a distinct object of study; the Skill Graph is introduced for compositional explainability by construction; the Wisdom Listener effect is proposed, whereby tacit-capable foundations compound in value with use, connecting to dynamic capabilities and organizational learning; and evidence from a JCI-accredited tertiary hospital in Brazil instantiates three of the six maturity stages under LGPD.
https://arxiv.org/abs/2609.04377
Semantic mapping plays a crucial role in the ability of a robot to interact with objects, operate and navigate a complex environment. The most common pipeline for semantic mapping consists of geometric mapping and localization (SLAM), perception, semantic fusion and semantic representation. However, more recent works also integrate a form of prior knowledge in their application, most notably knowledge graphs or semantic scene graphs, to improve contextual understanding of the environment. In this paper, we present a hybrid pipeline for semantic mapping. Our system incorporates an external calibrated camera using homography projection for geometric mapping and localization, combined with object detection, persistent object tracking and ontology driven semantic updates to build a dynamic semantic world model. Linear regression models are also used for correction of the estimated values of real world coordinates. The system continuously updates object instances, spatial properties and semantic relations based on real time sensory data. Ontologies are selected as form of knowledge representation due to their hierarchical structure, semantic expressiveness and support for dynamic world modelling.
https://arxiv.org/abs/2609.03891
Knowledge graphs describe reality in crisp assertions, while the systems now consuming them, foundation models and autonomous agents, reason natively in probabilities. We argue that this mismatch is why the integration of language models and knowledge graphs remains a data-feeding pipeline rather than a unified reasoning architecture. We envision Semantic Bayesian World Models (SBWMs): a Web that describes the world not as a database of facts but as a shared, evolving fabric of beliefs over knowledge graphs, where ontological axioms constrain priors, observations update beliefs by Bayesian conditioning, and actions intervene upon the world. We work through what an agent gains from such a model: a home-security agent deciding whether the figure at the gate is a courier or a burglar, an actuarial estimate aggregated by entailment rather than by string frequency, a planning task that language models reliably fail, and the estimation of quantities that no document has ever stated. We then set out what the community must build to make them possible: belief annotation over RDF~1.2, probabilistic entailment regimes, semantic calibration layers, and protocols by which agents that have never met can exchange, and disagree over, calibrated beliefs.
https://arxiv.org/abs/2609.03834
Knowledge graph embedding (KGE) demonstrates its effectiveness for predicting missing links in knowledge graphs (KGs) by projecting entities and relations into a low-dimensional vector space. It is crucial for KGE models to effectively capture inference patterns (patterns) inherent in KGs, such as symmetry/antisymmetry, inversion and composition. Although recent KGE models exhibit strong capabilities in modeling such diverse patterns, they suffer from inherent limitations stemming from pattern over-generalization, where embeddings learned from only a single pattern instance inevitably generalize that pattern to all related instances, i.e., generalize the pattern universally. To address this issue, we propose PogRE (Pattern Over-Generalization Robust Embedding), a simple but effective method that utilizes dense linear transformations and compound operations for relation representation. Our theoretical analysis demonstrates that a dense linear transformation allows a pattern to become progressively universal as more triples are observed in the pattern. Furthermore, after observing d+1 linearly independent entities (d+1 denotes the dimension of entity), the linear transformation guarantees universal generalization of the pattern across all related instances. Experimental results on three standard benchmark datasets show that PogRE outperforms existing state-of-the-art KGE models in link prediction. Moreover, our empirical results indicate that PogRE effectively addresses the negative impact of over-generalization.
https://arxiv.org/abs/2609.03487
While multi-agent systems based on large language models (LLMs) have shown promise in automating the progressive workflow of academic research, extending them to economics and business research, where specialized domain knowledge spans neighboring disciplines yet remains difficult to access in a structured way, presents two challenges. First, existing methods mostly retrieve at the paper level, yet the evidence needed for research tasks is often distributed across different sections, creating a granularity mismatch that hinders retrieval coverage and precision. Second, these fields demand strict empirical rigor, yet current systems provide limited mechanisms for learning from evaluation feedback. We present \textbf{BizSage}, a multi-agent framework combining corpus-level fine-grained retrieval with quality-driven self-evolution. We build a Lateral Knowledge Graph (LKG) by merging section-level knowledge graphs and apply Personalized PageRank (PPR) to surface semantically relevant and structurally important sections. Seven specialized agents collaborate under a Meta-Review self-evolution mechanism that distills failure modes from evaluation traces into reusable strategies. On a benchmark spanning four domains and three tasks, BizSage ranks first on the majority of metrics, achieves pairwise win-rates above 60\% against six baselines, and produces zero hallucinated citations. We hope BizSage paves the way for reliable research assistance in economics, business, and the broader social sciences.
https://arxiv.org/abs/2609.22235
Long-term LLM agents must preserve information across interactions while distinguishing repeated evidence, historical states, updates, and unresolved contradictions. Existing textual memory systems retrieve semantically relevant memories efficiently but often leave these relationships implicit, whereas richer structured approaches model them through global graphs, hierarchical abstractions, or reflection at greater complexity. We introduce MemoryLACE (MemLACE), a lightweight memory framework that explicitly models the lifecycle of textual evidence through sparse merge, supersession, and contradiction relations while preserving atomic natural-language memories and their provenance. Rather than retrieving memories independently, MemLACE reconstructs relation-aware evidence units that expose current, historical, supporting, and conflicting evidence for downstream reasoning. Across BEAM and StructMemEval, using open-weight and proprietary LLM backbones, MemLACE achieves the highest overall performance in same-backbone comparisons while reducing end-to-end runtime on BEAM by 66.6% relative to Hindsight, the strongest reported reflective-memory baseline. Ablation studies identify lifecycle expansion and temporal awareness as the principal contributors to these gains. Together, the results demonstrate that explicitly modeling the local lifecycle of textual evidence is sufficient to substantially improve long-term memory reasoning without requiring comprehensive knowledge graphs or global reflection.
https://arxiv.org/abs/2609.03201
Planning over Temporal Dynamic Knowledge Graphs (TDKGs) presents theoretical challenges in open-world environments with incomplete information. Existing action formalisms often face decidability issues and the Ramification Problem, while structural abduction requires expansive combinatorial search spaces. We introduce a unified framework with two modules--PIE-Abducer (incremental direct-derivation abduction) and PIE-APT (Abductive Planning for TDKGs)--operating natively on the expressive SROIQ Description Logic. Modeling state transitions as non-monotonic updates to deductively closed DL theories, we represent actions natively in OWL. This leverages an incremental reasoner to preserve decidability and natively bypass the Ramification Problem. To address incomplete knowledge, PIE-Abducer circumvents Minimal Hitting Set (MHS) enumeration. Instead of combinatorial search, it injects the logical negation of a goal into a consistent DL branch and synthesizes missing premises via direct refutation consequences. PIE-APT employs a recursive Generate-and-Test architecture, interleaving backward-chaining A* search with PIE-Abducer to synthesize both action sequences and abductive assumptions. Candidates undergo strict validation via forward-chaining Temporal Projection to evaluate logical trajectories. We evaluate four OWL benchmarks targeting semantic abilities missing from classical planning: parameterized goals with witness search, mid-search DL entailment, open-world assumption injection, and adversarial plan synthesis. Results show qualitative superiority over classical planners and prove our direct-derivation approach significantly outperforms an MHS-faithful baseline in abductive enrichment.
https://arxiv.org/abs/2607.27287
Uncertain knowledge graphs (UKGs) extend knowledge graphs by assigning each triple a continuous confidence score. Since most possible triples lack observed confidences, recent methods rely on semi-supervised learning to generate pseudo-labels. These methods initialize entity embeddings without using the confidence-weighted graph, discarding its global community and hub structure. We introduce QUEST, which adds no trainable parameters to the standard confidence-distribution learning pipeline. First, QUEST initializes entity embeddings using the smallest non-trivial eigenvectors of the confidence-weighted graph Laplacian, incorporating community and hub structure before training. Second, QUEST applies an unbiased mini-batch Dirichlet energy regularizer to enforce early-stage structural consistency. On two UKG datasets, QUEST improves confidence prediction and link prediction on six of eight metric-dataset pairs over prior methods and matches the previous best on the remaining two, while removing the instability spike observed on dense graphs. These results indicate that spectral structural priors combined with a graph Dirichlet energy regularizer improve accuracy, training stability, and checkpoint reliability in UKG completion.
https://arxiv.org/abs/2609.02519
Inductive knowledge graph completion (IKGC) aims to predict missing links involving entities unseen during training, requiring models to learn transferable relational and structural patterns. Existing subgraph- and path-based approaches often encode relational paths independently of their surrounding query subgraphs, although the predictive relevance of a path may vary across structural contexts. We propose PEARL, a Path-Entity Aligned Relational Learning framework that models paths as context-conditioned reasoning signals. PEARL constructs a query-specific contextual subgraph from the union of the query entities' neighborhoods and uses a large language model (LLM)-guided retriever to distill semantically relevant paths. It then builds a bipartite interaction graph over paths, contextual entities, and a global subgraph representation, allowing path embeddings to adapt to local and global structural evidence. To suppress noise introduced by the enlarged context, PEARL employs a dual-view contrastive objective that promotes representation consistency under stochastic contextual perturbations. Experiments on WN18RR, FB15k-237, and NELL-995 show that PEARL obtains the best average Hits@10 among the compared IKGC methods on all three benchmarks. Ablation studies, efficiency analyses, and case studies further validate the contributions of contextual subgraph modeling, semantic path retrieval, path-entity interaction, and contrastive regularization.
https://arxiv.org/abs/2609.02216
Temporal Knowledge Graph Question Answering (TKGQA) requires answer inference from evidence that is both structurally valid and temporally admissible. Existing methods often leave anchor-event binding, temporal admissibility, and ordinal selection implicit in model reasoning, task-specific training, or similarity-driven retrieval, allowing locally relevant but invalid facts to enter the answer context. We formulate complex TKGQA as evidence-space control and propose SCoP (Structured Constraint Parsing), a constraint-centric framework that externalizes temporal decisions before answer inference. Instead of treating retrieved facts as admissible evidence by default, SCoP separates answer-seeking event patterns from temporal anchor events, conservatively grounds them to canonical TKG entities and relations, and translates temporal intent into executable constraints with optional ranking requirements. These constraints operate over normalized point and interval ranges, enabling deterministic filtering of structurally compatible candidates and producing a compact evidence space for generation. Experiments on MultiTQ and TimelineCronQ-R assess SCoP across timestamped point-fact and interval-oriented settings with richer temporal relations and ordering dependencies. Without task-specific parameter updates, SCoP achieves 0.825 Hits@1 on MultiTQ and 0.761 Hits@1 on TimelineCronQ-R, with gains on constraint-intensive question types. These results support explicit evidence-space control over unconstrained retrieval or implicit temporal reasoning.
https://arxiv.org/abs/2609.22213