Shrimp diseases continue to cause devastating losses in the aquaculture industry, driving a critical need for robust, automated detection. This work contributes the first application of Vision Transformers (ViT) and Self-Supervised Learning (SSL) to the shrimp farming domain, addressing both performance bottlenecks and data labeling challenges. We propose two deep learning pipelines to classify four key diseases: Healthy, Black Gill (BG), White Spot Syndrome Virus (WSSV), and a co-infection of both using a dataset of 4,348 images. First, our supervised transfer-learning approach leverages ImageNet-pretrained ViT-Small/16 and EfficientNet backbones. Second, we introduce a contrastive learning framework (SimCLR) with a ViT-Small encoder to extract robust representations from unlabeled images prior to fine-tuning. Our results establish strong new baselines for sustainable aquaculture monitoring. The supervised approach achieves an outstanding 96% accuracy with fast convergence, outperforming traditional generic models, while the label-efficient SSL approach reaches a highly competitive 85% validation accuracy.
https://arxiv.org/abs/2609.23397
Automatic target recognition (ATR) with synthetic aperture sonar (SAS) supports advanced naval capabilities, but deep learning is constrained by scarce target imagery, background clutter, and human-in-the-loop assessment. We adapt DINOv3 Vision Transformer (ViT) models to underwater SAS ATR using a three-stage parameter-efficient framework. Stage 1 uses Low-Rank Adaptation (LoRA) while freezing the ViT backbone, bridging the gap between natural-image pretraining and underwater acoustic propagation. Stage 2 uses hard-negative mining to strengthen the decision boundary against acoustic mimics, including rocks and sediment formations resembling man-made targets. Stage 3 uses Supervised Contrastive Learning (SupCon) to separate target and clutter representations. We evaluate at-sea SAS data using a mission-level geographic split, compare all arms at 85 percent test recall, and repeat each comparison over three random seeds. LoRA accounts for the primary effect, increasing area under the precision-recall curve (AUPRC) from 0.300 to 0.679 +/- 0.027 using the same frozen backbone. Rank 4 achieves this result while training only 0.26 percent of weights. Neither refinement stage exceeds its matched control: hard-negative mining changes AUPRC by -0.0045 +/- 0.0119 versus an equal-size random curriculum, and SupCon changes AUPRC by +0.0002 +/- 0.0096 versus the preceding stage. These null results indicate that mining occurred on data the encoder had already fit and that supervised stages had already imposed most target-clutter geometry. One efficient adaptation stage is sufficient; stacked refinement is not.
https://arxiv.org/abs/2609.21061
Deep learning predictive maintenance models suffer from poor transferability across machines and operating conditions, especially when labelled data are scarce and signals span five orders of magnitude in sampling frequency (1 Hz to ~100 kHz). We propose FreqCondNorm, a Transformer-based architecture that introduces a FiLM-style frequency-conditioned normalization layer to unify heterogeneous time-series within a single model. The architecture is pretrained on five public predictive maintenance datasets (CWRU, MFPT, UOC18, PRONOSTIA, CMAPSS) using masked auto-encoding and contrastive learning with balanced domain sampling. On fault diagnosis, the model achieves 99.2% accuracy on CWRU (+6.4 pp over CNN) and 82.1% zero-shot accuracy on MFPT, demonstrating strong transfer across sampling frequencies. However, the approach does not improve remaining useful life prediction, suggesting a mismatch between pretraining and RUL objectives that warrants future investigation.
https://arxiv.org/abs/2609.20535
Accurate instance-level and functional understanding of urban buildings in large-scale point clouds is essential for digital city modeling and urban analysis. However, the extensive spatial coverage of urban scenes leads most existing methods to rely on predefined blocks for training and evaluation, although such partitions are rarely available in real-world applications and introduce additional preprocessing while fragmenting complete building structures. To address this issue, we propose an adaptive region-dividing strategy with unified scene-level evaluation. Specifically, the 3D point cloud is projected onto a bird's-eye-view (BEV) plane, where a pretrained segmentation model is used to detect building regions. The detected bounding boxes are then back-projected to the original point cloud to construct structure-aligned adaptive training blocks, enabling semantically guided dynamic partitioning without manual design. Furthermore, beyond instance-level understanding, few methods have explored fine-grained classification for urban buildings, and thus we also put forward a fine-grained classification model for urban buildings with a spatially-supervised contrastive loss. First, for each segmented building, a point transformer classifier jointly encodes its body and local context using geometric, color, and core-context information. Then, the class-balanced weighted cross-entropy is used to alleviate severe class imbalance. The proposed spatially-supervised contrastive loss further enhances inter-class discriminability by assigning greater weight to spatially proximate, same-category buildings, encouraging compact functional representations while separating easily confused categories. Extensive experiments on UrbanBIS and STPLS3D demonstrate the advantages of the proposed method in building instance segmentation and fine-grained classification compared to existing SOTA methods.
https://arxiv.org/abs/2609.19631
Self-supervised learning (SSL) has become an effective approach for learning visual representations without manual annotations. Among SSL approaches, contrastive learning has been widely used for visual representation learning. However, existing contrastive SSL methods have focused primarily on image-level or pixel-level representation learning, while region-level representation learning remains less explored. We propose SPARC, a region-level contrastive learning framework that leverages superpixels to establish explicit correspondence between augmented image views. SPARC introduces a region contrastive branch that performs superpixel-based feature pooling and optimizes a region-level contrastive objective jointly with a global image-level objective. Under identical settings, SPARC consistently outperforms previous methods such as MoCo-v2 and DenseCL, achieving improvements of up to +9.79 mIoU for semantic segmentation and +4.88 AP for object detection. Ablation studies further demonstrate that region-level objectives produce the strongest performance. Thus, region-level contrastive learning is an effective approach for improving self-supervised visual pretraining for dense prediction tasks. Code repository can be accessed at this https URL.
https://arxiv.org/abs/2609.25067
Cross-view object geo-localization (CVOGL) locates a target in satellite imagery using drone or street-view queries. Existing methods train separate detectors for each viewpoint, leading to parameter redundancy and impeding cross-view knowledge sharing. Moreover, top-ranked satellite candidates are often visually similar, so visual appearance and categorical labels alone are insufficient to resolve such ambiguity. To address these, we propose MVLGeo, an efficient framework designed to unify multiple viewpoints and reduce model redundancy. First, we introduce environmental contextual text from the query view as cues to distinguish visually similar candidates via Vision-Language Reranking (VL-Rerank). Second, we design a multi-view Mixture-of-Experts architecture (MV-MoE) with a shared encoder and view-specific experts to reduce redundancy and promote knowledge sharing, while cross-view contrastive learning aligns their representations for consistency. Third, we introduce an adaptive elliptical prior (ESAM-Prior) as auxiliary positional encoding for anisotropic geometric perception. Extensive experiments on the CVOGL benchmarks confirm that MVLGeo, as a unified model for multiple query viewpoints, achieves state-of-the-art performance, demonstrating robustness to input degradation and generalization across viewpoints. Code and models will be available on GitHub to facilitate future work.
https://arxiv.org/abs/2609.18139
Region-level retrieval aims to align user-specified image regions with relevant regions or textual descriptions, playing a crucial role in realworld applications such as e-commerce product search and RAG. Although recent Large Multimodal Models (LMMs) have made significant strides in multimodal retrieval, they primarily focus on global-level tasks and struggle to capture effective region-level representations. To bridge this gap, we present RegRet, an LMM-based Region-level Retrieval framework that enhances the regional representations without compromising overall global retrieval performance. At its core, RegRet integrates a Region-Aware Encoder to capture detailed regional features while balancing them with the global background context. To further enhance the fine-grained understanding and discriminability of representations, we design a multi-stage training pipeline that includes detailed localized captioning and regional contrastive learning tasks. In addition, considering the absence of region-level contrastive training data and the limited diversity of evaluation tasks in current benchmarks, we introduce the REGMB benchmark. It comprises 225k contrastive pairs, covering four multimodal retrieval tasks. Extensive experiments validate the effectiveness of our approach. RegRet outperforms strong baselines in the zero-shot setting. Further training with contrastive learning leads to an average improvement of more than 20\% on both REGMB and public benchmarks, while achieving comparable or better results on global-level retrieval tasks.
https://arxiv.org/abs/2609.16847
Large-scale vision-language models (VLM) such as CLIP enable strong open-vocabulary reasoning, yet deploying these capabilities on resource-constrained edge devices remains challenging. EdgeVL addresses this problem by distilling CLIP representations into lightweight multi-modal encoders and applying quantization-aware training (QAT) for efficient Open-Vocabulary Classification (OVC) on edge hardware. However, its two-stage optimization applies different objectives for distillation and QAT, and contrastive learning is performed within the quantized student space, which can result in inconsistent optimization and reduced training efficiency. Moreover, identical supervision across RGB and non-RGB modalities may lead to modality imbalance. We propose a unified framework for quantized semantic distillation tailored to edge deployment. By jointly optimizing distillation and quantization within a unified teacher-anchored framework, our method ensures consistent training under quantization, suppressing hard negatives and enlarging decision margins. Additionally, we design a lightweight cross-attention adapter that enhances non-RGB representations through RGB-guided semantic transfer, narrowing the modality gap. Extensive experiments demonstrate consistent improvements on non-RGB modalities while maintaining deployment efficiency.
https://arxiv.org/abs/2609.16689
Modern Visual Question Answering (VQA) models often exploit spurious correlations in training data, leading to poor out-of-distribution (OOD) generalization due to language bias. Although counterfactual learning has shown promise, existing methods can be improved to better guide attention toward causal evidence and strengthen feature discrimination. To address this, we propose a novel training framework that enhances counterfactual contrastive learning for VQA. Our framework introduces three key contributions: (1) a three-stage curriculum for stable multi-objective optimization, (2) an enhanced Batch-Contrastive loss for more discriminative feature learning, and (3) two novel regularizers, Answer-Contrastive (AC) loss to refine the prediction space and Gradient-Discrepancy (GD) loss to enforce causal visual grounding. Our model achieves a competitive accuracy of 61.64% on the bias-sensitive VQA-CP v2 benchmark while maintaining 62.80% on the standard VQA v2 dataset, yielding a small generalization gap of 1.16%. This demonstrates a strong balance between OOD robustness and in-distribution performance.
https://arxiv.org/abs/2609.16567
Self-supervised learning (SSL) can reduce the need for labelled medical images, but the choice of pretext objective remains unclear for lung ultrasound (LUS). Contrastive learning, masked reconstruction, and joint-embedding predictive architectures (JEPA) differ in the space in which their targets are defined, yet existing ultrasound studies compare them under different corpora, backbones, and evaluation protocols. We compare these three objective families using the same encoder backbone, pretraining corpus, optimisation schedule, and frozen-evaluation protocol. Encoders are pretrained on COVID-BLUeS LUS videos and evaluated with linear, $k$NN, and attentive probes at 5\%, 10\%, 50\%, and 100\% label budgets. Evaluation is performed on POCUS using patient-level five-fold cross-validation and on the independently acquired Mendeley-Uganda dataset, which is excluded from both pretraining and probe fitting. At the full label budget under linear probing, VideoMAE and V-JEPA achieve $66.5 \pm 13.1$ and $65.4 \pm 11.7$ balanced accuracy on POCUS, while MoCo achieves $42.1 \pm 1.2$. On Mendeley-Uganda, the ranking reverses: MoCo performs best at $62.7 \pm 1.0$, followed by VideoMAE at $53.8 \pm 2.8$, while V-JEPA falls near chance at $35.1 \pm 4.9$. These results show that POCUS probe accuracy alone does not identify the objective that transfers best across datasets. We also outline planned representation-level analyses to examine this reversal. Code is publicly available at this https URL.
https://arxiv.org/abs/2609.16551
Spatial Transcriptomics (ST) has transformed biomedical research by enabling the spatial mapping of gene expression across tissue sections. However, high operational costs, specialized equipment requirements, and sensitivity to experimental noise limit the accessibility and scalability of ST. Recent computer vision approaches aim to overcome these limitations by predicting spatial gene expression directly from histopathology images. While effective, current approaches often suffer from gene expression over-smoothing and overly uniform predictions across tissue regions, suggesting that further progress depends on learning representations that reflect the hierarchical and asymmetric structure of gene regulation and tissue morphology. To address these issues, we propose Hyperbolic Contrastive Learning with Entailment for Spatial Transcriptomics (HyCLoST), a hyperbolic contrastive learning model that captures the intrinsic hierarchical relationships within ST data. By leveraging hyperbolic geometry and a gene-to-image entailment loss, HyCLoST learns structured, biologically grounded representations that improve gene expression prediction accuracy, achieving a 6% reduction in MSE and an 8% increase in PCC across 26 ST datasets, over previous methods. Our source code is publicly available at this https URL
https://arxiv.org/abs/2609.16207
Deep networks trained on structural MRI for Alzheimer's disease (AD) staging often reach reasonable accuracy while attending to anatomically irrelevant regions, and multimodal models that add clinical tables frequently rely on variables that were used to assign the diagnostic label in the first place. We study both issues with a deliberately lightweight slice-based encoder (ResNet18 with a one-layer Transformer over slices) on 1,075 baseline T1-weighted scans from ADNI-1. First, we use FastSurfer segmentations as an anatomical reference: YOLOv8 models trained on segmentation-derived labels localize Alzheimer-relevant structures with mAP_50 above 0.96, and a Grad-CAM comparison shows that the image-only classifier frequently attends to the skull, orbits and background. Second, we adapt a CLIP-style image - tabular contrastive framework and organize ADNIMERGE variables along a label-leakage spectrum. Fusion with cognitive scores yields 87.3% three-way accuracy, which we treat as a leakage-driven upper bound rather than an imaging result; fusion with regional volumes yields 73.0%. We observe that the choice of contrastive target changes what the image encoder learns: on MCI vs. CN, the image-only head reaches 52.4% when the encoder is aligned to cognitive scores and 73.8\% when aligned to volumes, although no tabular input is used at inference. Third, restricting the input to a per-subject crop of the medial temporal lobe raises image-only three-way accuracy from 58.7% to 65.1%. All results come from single runs on a small balanced test set, and we report confidence intervals and the protocol differences that prevent direct comparison with published numbers.
https://arxiv.org/abs/2609.15888
Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease in which early assessment remains challenging, particularly in low-resource settings where MRI is often unavailable. High-resolution ultrasound (HRUS) of the tongue offers a portable and low-cost alternative for evaluating bulbar involvement, but learning reliable diagnostic models is limited by small datasets and the difficulty of extracting robust representations from ultrasound alone. We propose AlignUS, a cross-modal knowledge distillation framework that transfers anatomical knowledge from MRI to a HRUS-based classifier while requiring only HRUS at inference time. The model combines classification loss, supervised contrastive learning, and feature-level distillation to align HRUS representations with MRI embeddings. AlignUS achieves a patient-level balanced accuracy of 0.958, macro-F1 of 0.963, and ROC-AUC of 0.990, aggregated across four patient-level cross-validation folds, with consistent improvements over HRUS baselines and cross-modal alternatives. These results demonstrate that MRI-derived supervision can substantially improve ultrasound-based ALS assessment while preserving low-cost, inference-time independence from MRI.
https://arxiv.org/abs/2609.15285
Passive acoustic monitoring can measure biodiversity at larger scales, but time--frequency annotation of animal vocalizations is expensive, site-specific, and difficult to sustain at scale. We present a label-efficient sound detection framework that combines masked audio pretraining with a lightweight detector on mel spectrograms, then further improves robustness through iterative self-training on unlabeled audio. We first pretrain a ViT-based encoder on unlabeled recordings via masked reconstruction and transfer the encoder to a detection backbone. To better separate animal sounds from confounding background, we add a box-level contrastive loss that pulls matched event regions together while pushing noisy negatives apart. We then apply a two-stage pseudo-labeling curriculum to exploit large unlabeled pools without additional annotation. We evaluate the performance on two ecologically distinct domains: tropical rainforest soundscapes (Indonesia) and bird vocalizations in Mediterranean habitats (Spain). On both domains, masked audio pretraining and contrastive learning consistently improve time--frequency detection under temporal and cross-site distribution shift, and self-training yields further gains in out-of-distribution performance. On the rainforest domain, MAST with self-training achieves +0.22 mAP and +0.24 F1 over the strongest baseline under cross-site shift. On the bird domain, self-training achieves +0.12 mAP and +0.10 F1 over the strongest baseline under cross-site shift. Overall, our results show that MAST can effectively extend self-supervised audio representations from clip-level tasks to robust box-level localization across diverse bioacoustic settings, providing a practical path for biodiversity monitoring with limited labels.
https://arxiv.org/abs/2609.15221
Large language model agents rely on effective model context to obtain task-relevant information for decision-making. Many existing context engineering approaches primarily rely on the context generated from the past experience and retrieval mechanisms that reuse these context. However, retrieved context from past tasks must be adapted by the execution agent to fit new situations, placing additional reasoning burden on the underlying LLM. To address this limitation, we propose a generative context augmentation framework using Contrastive Learning of Experience via Agentic Reflection (CLEAR). CLEAR first employs a reflection agent to perform contrastive analysis over past execution trajectories and summarize useful context for each observed task. These summaries are then used as supervised fine-tuning data to train a context augmentation model (CAM). Then we further optimize CAM using reinforcement learning, where the reward signal is obtained by running the task execution agent. By learning to generate task-specific knowledge rather than retrieve knowledge from the past, CAM produces context that is better tailored to the current task. We conduct comprehensive evaluations on the AppWorld and WebShop benchmarks. Experimental results show that CLEAR consistently outperforms strong baselines. It improves task completion rate from 72.62% to 81.15% on AppWorld test set and averaged reward from 0.68 to 0.74 on a subset of WebShop, compared with baseline agent. Our code is publicly available at this https URL.
https://arxiv.org/abs/2604.07487
Computed tomography (CT) and positron emission tomography (PET) provide complementary anatomical and functional information for cancer diagnosis and treatment planning. However, the widespread use of PET is limited by high radiation exposure, elevated costs, and restricted availability. To address these limitations, deep learning-based CT-to-PET translation has emerged as a promising approach for synthesizing PET-like information directly from CT images, although accurately modeling the large cross-modal gap remains challenging. In this work, we propose a 3D CT-to-PET translation framework based on latent Brownian Bridge Diffusion (BBDM). The method consists of two stages. First, a Variational Autoencoder (VAE) is trained on paired CT-PET patches, integrating contrastive learning to improve latent alignment between anatomical and metabolic representations. Second, a BBDM is trained in the latent space to translate CT latent representations into their corresponding PET counterparts. The translated PET latents are then decoded and stitched to reconstruct the final 3D PET volume. We evaluate the proposed approach on two publicly available datasets. Quantitative results based on image fidelity and lesion-level PET-specific metrics demonstrate improved performance compared with competing methods. In particular, the proposed approach improves PET signal fidelity, better preserves clinically relevant uptake patterns, and shows improved performance in preserving small-lesion metabolic activation, paving the way for virtual imaging applications.
https://arxiv.org/abs/2609.12860
Cognitive Diagnosis Models (CDMs) play a pivotal role in personalized online learning. Traditional CDMs rely on discrete, ID-based embeddings to represent students, exercises, and concepts. This paradigm diverges from the nature of learner cognition, where knowledge is not stored and retrieved as isolated symbols. As a result, CDMs suffer from semantic limitations when new exercises or concepts appear. In this paper, we propose a Process-aware Language Cognitive Diagnosis (PLCD) framework that uses language-derived structures as cognitive priors and response records to calibrate student posterior states. PLCD leverages large language models (LLMs) to construct concept schemas and cognitive process graphs, and uses target-conditioned semantic memory to retrieve historical responses that are relevant to each target exercise. A process-grounded Language-to-Cognition Mapper with DA-MoE experts and process-level contrastive learning then maps the textual evidence into a unified cognitive space. Experimental results show that PLCD not only outperforms traditional baselines in predicting student performance but also exhibits strong cognitive transfer capabilities. These results connect the computational power of LLMs with the psychometric goal of measuring latent knowledge states, suggesting that structured language priors calibrated by response records can improve cold-start robustness and cognitive grounding.
https://arxiv.org/abs/2609.12403
Due to the proliferation of vehicle trajectory data enabled by advanced sensing technologies, path representation learning has become a pivotal task in intelligent transportation systems. Although existing self-supervised approaches have achieved promising performance, their dependence on deterministic contrastive learning paradigms and handcrafted view augmentation strategies inherently restricts their cross-scenario generalization capabilities. To address these limitations, we present DGCPath, an innovative Distribution-aware Generative Contrastive learning framework for Path representation. This framework establishes a synergistic connection between generative modeling and distributional contrastive learning, enabling the acquisition of robust and transferable feature embeddings. Specifically, our framework incorporates: (1) a diffusion-based view generator that autonomously produces semantically coherent yet diverse trajectory views from Gaussian noise; (2) a variational contrastive mechanism that enforces latent feature alignment at the distribution level, transcending conventional instance-wise consistency; and (3) a novel generative cross-supervision module that reinforces view-level consistency through cross-view reconstruction learning. Comprehensive evaluations on three real-world trajectory datasets demonstrate that DGCPath outperforms state-of-the-art baselines on two distinct downstream tasks, validating its enhanced generalization capability and representation effectiveness.
https://arxiv.org/abs/2609.07316
Universal multimodal embedding (UME) increasingly demands encoder's capacity for handling a broad range of tasks and modalities with increased complexity. Prior scaling methods either increase the representation size, retrieval effort, or scales the encoder into a heavy multimodal LLM. Recent works, such as Think-Then-Embed (TTE), explore scaling via reasoning tokens. However, embedding models are hard to scale up: increasing parameters directly tradeoffs for the large training batch size that contrastive learning needs, and retrieval has to be served under tight latency. Moreover, UME tasks are diverse in complexity, where scaling up embedders can bring significant redundant computation. In this work, we propose MOEMB, which instead scales UME along the expert axis through mixture-of-experts (MoE), growing encoder capacity while preserving single-vector, non-autoregressive encoding. Through a systematic study of the design space and training recipes for MoE-based UME, MoEMB sets a new state of the art on both MMEB-V2 and MRMR among models trained on public MMEB-family data: with only 3B active parameters, MoEMB surpasses TTE-based methods with >4x active parameters, using significantly less computes. To further improve the scalability and efficiency, we conduct the first comprehensive study of adaptive computation for MoE-based embedding, spanning diverse strategies across training-based and inference-only methods. Together, these results support expert scaling as an effective and efficient direction for UME, with adaptive computation further improving efficiency for MLLM-based embedding models towards large-scale retrieval and recommendation systems.
https://arxiv.org/abs/2609.08663
Trajectory representation learning underpins a wide range of trajectory analytics tasks; however, most existing self-supervised approaches, whether discriminative or generative, adopt an open-loop paradigm, relying on fixed data augmentations or random masking without feedback, which limits their ability to generalize and scale. We propose REFINE, a simple yet effective Representation lEarning Framework vIa closed-loop traNscription rEfinement for trajectory data. Drawing upon feedback control theory, REFINE tightly couples road-network-aware generative reconstruction with feedback-driven contrastive learning, enabling the model to capture fine-grained local movement semantics and global spatio-temporal dependencies without manually designed augmentation views. We further provide a control-theoretic analysis that establishes convergence guarantees for the proposed closed-loop optimization. Extensive experiments on four real-world datasets demonstrate that REFINE consistently outperforms state-of-the-art methods across multiple downstream tasks while remaining computationally efficient and scalable. This paper is an extended version of REFINE: Trajectory Representation Learning via Closed-Loop Transcription, to appear in KDD 2026.
https://arxiv.org/abs/2609.07206