Large-scale GPS trajectory data offer rich observations of human mobility, yet assigning trip purposes to detected stops remains challenging due to the absence of individual-level ground truth, spatial uncertainty from GPS noise and incomplete points of interest (POIs) coverage, and fundamental behavioral differences across trip purposes. We propose a weakly supervised framework integrating neighborhood-level POI semantic zones with distance-weighted spatial likelihoods, differentiated inference strategies for mandatory and non-mandatory activities, and a multi-phase Pareto optimization that jointly minimizes distributional divergence from household travel survey statistics and maximizes inference reliability without requiring annotated labels. Evaluated on over 81 million staypoints in Los Angeles, the framework reduces activity type frequency Jensen-Shannon distance (JSD) by 23%, start time JSD by 48%, and duration JSD by 12% respectively relative to a comparable baseline. The proposed approach provides a scalable and uncertainty-aware path from raw GPS trajectories to semantically annotated mobility data for travel demand modeling and transportation policy analysis.
https://arxiv.org/abs/2605.01257
Building-integrated photobioreactors (PBRs) offer a pathway for carbon-neutral architecture, yet deployment is hindered by configuration complexity and biological maintenance. This paper presents a modular PBR facade system powered by a computational framework reconciling design intent with physical validity. We introduce 'carbon-neutralization bricks' featuring integrated vessel-and-conduit geometry; monolithic fluid channels enable 'plug-and-play' assembly. To navigate the combinatorial complexity of 14 modular geometries, we develop a Computational Sketch-to-Layout Agent that formulates layout synthesis as a Constraint Satisfaction Problem (CSP). Using the CP-SAT engine, the agent treats sparse user sketches as soft priors while enforcing hard constraints like port alignment and global connectivity. This allows non-experts to synthesize fabrication-ready configurations in near real-time. Furthermore, to facilitate autonomous maintenance, we propose a weakly supervised algae health monitoring pipeline. By employing a hybrid CNN-attention backbone and a temporal ranking loss, the system quantifies biological vitality from photographs without absolute ground-truth labels. Experiments demonstrate the CSP solver achieves a 95.5% success rate on grid scales up to 15 x 15. Qualitative evaluations confirm the framework preserves design semantics while ensuring operational integrity. Long-term tests show the vision module produces health trajectories aligned with 14-day biological cycles, suggesting that integrating interactive synthesis with low-cost computer vision can democratize scalable carbon capture systems.
https://arxiv.org/abs/2606.09849
In pathology, the spatial distribution and proportions of tissue types are key indicators of disease progression, and are more readily available than fine-grained annotations. However, these assessments are rarely mapped to pixel-wise segmentation. The task is fundamentally underdetermined, as many spatially distinct segmentations can satisfy the same global proportions in the absence of pixel-wise constraints. To address this, we introduce Variational Segmentation from Label Proportions (VSLP), a two-stage framework that infers dense segmentations from global label proportions, without any pixel-level annotations. This framework first leverages a pre-trained transformer model with test-time augmentation to produce a pixel-wise confidence estimate. In the second stage, these estimates are fused by solving a variational optimization problem that incorporates a Wasserstein data fidelity term alongside a learned regularizer. Unlike end-to-end networks, our variational method can visualize the fidelity-regularization energy, resulting in more interpretable segmentation. We validate our approach on two public datasets, achieving superior performance over existing weakly supervised and unsupervised methods. For one of these datasets, proportions have been estimated by an experienced pathologist to provide a realistic benchmark to the community. Furthermore, the method scales to an in-house dataset with noisy pathologist labels, severely outperforming state-of-the-art methods, thereby demonstrating practical applicability. The code and data will be made publicly available upon acceptance at this https URL.
https://arxiv.org/abs/2604.24347
Histologic assessment of ulcerative colitis (UC) activity is an important endpoint in clinical trials and routine care, but manual grading with indices such as the Nancy histological index (NHI) is time-consuming and prone to observer variability. While computational pathology methods can automate scoring, many approaches depend on dense region-level annotations, which are costly to obtain, particularly in heterogeneous, multicenter cohorts. We propose a weakly supervised multiple instance learning (MIL) approach for whole-slide images that learns from case- and slide-level NHI labels, leveraging foundation models. Our method targets clinically relevant endpoints, including neutrophilic activity and derived Nancy-low/high groupings, enabling full five-grade NHI prediction. On a multicenter dataset of H&E-stained colon biopsies from three hospitals (2019-2025), we evaluate multiple foundation model encoders and aggregation strategies. We find that foundation model choice and resolution substantially affect performance, with Virchow2 providing the most consistent gains, and that a simple ensembling rule improves five-grade NHI prediction compared to a hierarchical gating baseline. Overall, our results demonstrate that weakly supervised MIL with modern foundation-model representations can provide robust, interpretable UC histology activity assessment in realistic multicenter settings.
https://arxiv.org/abs/2604.23706
Large Language Models (LLMs) can reason well, yet often miss decisive evidence when it is buried in long, noisy contexts. We introduce HiLight, an Evidence Emphasis framework that decouples evidence selection from reasoning for frozen LLM solvers. HiLight avoids compressing or rewriting the input, which can discard or distort evidence, by training a lightweight Emphasis Actor to insert minimal highlight tags around pivotal spans in the unaltered context. A frozen Solver then performs downstream reasoning on the emphasized input. We cast highlighting as a weakly supervised decision-making problem and optimize the Actor with reinforcement learning using only the Solver's task reward, requiring no evidence labels and no access to or modification of the Solver. Across sequential recommendation and long-context question answering, HiLight consistently improves performance over strong prompt-based and automated prompt-optimization baselines. The learned emphasis policy transfers zero-shot to both smaller and larger unseen Solver families, including an API-based Solver, suggesting that the Actor captures genuine, reusable evidence structure rather than overfitting to a single backbone.
https://arxiv.org/abs/2604.22565
Visual Place Recognition (VPR) determines a query image's geographic location by matching it against geotagged databases. However, existing methods struggle with perceptual aliasing caused by irrelevant regions and inefficient re-ranking due to rigid candidate scheduling. To address these issues, we introduce FoL++, a method combining robust discriminative region modeling with adaptive re-ranking. Specifically, we propose a Reliability Estimation Branch to generate spatial reliability maps that explicitly model occlusion resistance. This representation is further optimized by two spatial alignment losses (SAL and SCEL) to effectively align features and highlight salient regions. For weakly supervised learning without manual annotations, a pseudo-correspondence strategy generates dense local feature supervision directly from aggregation clusters. Our Adaptive Candidate Scheduler dynamically resizes candidate pools based on global similarity. By weighting local matches by reliability and adaptively fusing global and local evidence, FoL++ surpasses traditional independent matching systems. Extensive experiments across seven benchmarks demonstrate that FoL++ achieves state-of-the-art performance with a lightweight memory footprint, improving inference speed by 40% over FoL. Code and models will be released (and merged with FoL) at this https URL.
https://arxiv.org/abs/2604.22390
Accurate diagnosis of pediatric brain tumors, starting with histopathology, presents unique challenges for deep learning, including severe data scarcity, class imbalance, and fine-grained morphologic overlap across diagnostically distinct subtypes. While pathology foundation models have advanced patch-level representation learning, their effective adaptation to weakly supervised pediatric brain tumor classification under limited data remains underexplored. In this work, we introduce an expert-guided contrastive fine-tuning framework for pediatric brain tumor diagnosis from whole-slide images (WSI). Our approach integrates contrastive learning into slide-level multiple instance learning (MIL) to explicitly regularize the geometry of slide-level representations during downstream fine-tuning. We propose both a general supervised contrastive setting and an expert-guided variant that incorporates clinically informed hard negatives targeting diagnostically confusable subtypes. Through comprehensive experiments on pediatric brain tumor WSI classification under realistic low-sample and class-imbalanced conditions, we demonstrate that contrastive fine-tuning yields measurable improvements in fine-grained diagnostic distinctions. Our experimental analyses reveal complementary strengths across different contrastive strategies, with expert-guided hard negatives promoting more compact intra-class representations and improved inter-class separation. This work highlights the importance of explicitly shaping slide-level representations for robust fine-grained classification in data-scarce pediatric pathology settings.
https://arxiv.org/abs/2604.21060
The expanding ecosystem of pathology foundation models has produced powerful but fragmented tile-level representations, limiting their use in clinical tasks that require unified slide-level reasoning and interpretable linkage to clinically meaningful information. We present ASTRA, a pan-cancer framework that integrates heterogeneous foundation-model representations into a shared slide-level representation space and semantically grounds that space using structured pathology annotation fields, including classification category, cancer type, and anatomic site. ASTRA combines sparse mixture-of-experts contextualization, masked multi-model reconstruction, and contrastive alignment to structured pathology prompts to learn slide representations that support 4-category classification, 3-class solid tumor typing, 16-class cancer typing, and text-guided tumor localization without pixel-level supervision. Developed on a CHTN cohort of 10,359 whole-slide images (WSIs) spanning 16 tumor types, ASTRA consistently improves pan-cancer classification across four pathology foundation-model backbones, achieving up to 97.8% macro-AUC for 4-category classification, 99.7% for 3-class solid tumor typing, and 99.2% for 16-class cancer typing. For tumor localization, ASTRA achieves a mean Dice of 0.897 on an annotated in-domain CHTN subset (n = 380) spanning 16 cancer types and 0.738 on an external TCGA cohort (n = 1,686) spanning four cancer types. These results demonstrate that minimal structured pathology annotation fields derived from slide-level metadata can provide effective semantic supervision for unified slide representation learning, enabling both pan-cancer prediction and weakly supervised tumor localization within a single framework.
https://arxiv.org/abs/2604.22846
Clinical AI development has traditionally followed a collaborative paradigm that depends on close interaction between clinicians and specialized AI teams. This paradigm imposes a practical challenge: clinicians must repeatedly communicate and refine their requirements with AI developers before those requirements can be translated into executable model development. This iterative process is time-consuming, and even after repeated discussion, misalignment may still exist because the two sides do not fully share each other's expertise. However, autonomous coding agents may change this paradigm, raising the possibility that clinicians could develop clinical AI models independently through natural-language interaction alone. In this study, we present such an autonomous prototype for clinician-driven clinical AI development. We evaluated the system on five clinical tasks spanning dermoscopic lesion classification, melanoma-versus-nevus triage, wrist-fracture detection (including a weakly supervised variant with only 5% bounding-box annotations), and debiased pneumothorax classification on chest radiographs. Across these settings, the system consistently developed models from clinician requests and achieved promising performance. Notably, in a debiased pneumothorax classification task on chest radiographs, where chest drains can act as a major confounder, the system successfully mitigated shortcut learning and nearly halved the model's reliance on chest drains. These findings provide proof of concept that autonomous coding agents may help shift clinical AI development toward a more clinician-driven paradigm, reducing the communication overhead and dependence on specialized AI developers. Although further validation and robustness assessment are needed, this study suggests a promising path toward making clinical AI development more accessible.
https://arxiv.org/abs/2604.17110
High-resolution (HR) land-cover mapping is often constrained by the high cost of dense HR annotations. We revisit this problem from the perspective of map super-resolution, which enhances coarse low-resolution (LR) land-cover products into HR maps at the resolution of the input imagery. Existing weakly supervised methods can leverage LR labels, but they typically use them to retrain dense predictors with substantial computational cost. We propose MapSR, a prompt-driven framework that decouples supervision from model training. MapSR uses LR labels once to extract class prompts from frozen vision foundation model features through a lightweight linear probe, after which HR mapping proceeds via training-free metric inference and graph-based prediction refinement. Specifically, class prompts are estimated by aggregating high-confidence HR features identified by the linear probe, and HR predictions are obtained by cosine-similarity matching followed by graph-based propagation for spatial refinement. Experiments on the Chesapeake Bay dataset show that MapSR achieves 59.64% mIoU without any HR labels, remaining competitive with the strongest weakly supervised baseline and surpassing a fully supervised baseline. Notably, MapSR reduces trainable parameters by four orders of magnitude and shortens training time from hours to minutes, enabling scalable HR mapping under limited annotation and compute budgets. The code is available at this https URL.
https://arxiv.org/abs/2604.14582
Vision transformers (ViT) have been shown to allow for more flexible feature detection and can outperform convolutional neural network (CNN) when pre-trained on sufficient data. Due to their promising feature detection capabilities, we deployed ViTs for morphological classification of anaplastic large cell lymphoma (ALCL) versus classic Hodgkin lymphoma (cHL). We had previously designed a ViT model which was trained on a small dataset of 1,200 image patches in fully supervised training. That model achieved a diagnostic accuracy of 100% and an F1 score of 1.0 on the independent test set. Since fully supervised training is not a practical method due to lack of expertise resources in both the training and testing phases, we conducted a recent study on a modified approach to training data (weakly supervised training) and show that labeling training image patch automatically at the slide level of each whole-slide-image is a more practical solution for clinical use of Vision Transformer. Our ViT model, trained on a larger dataset of 100,000 image patches, yields evaluation metrics with significant accuracy, F1 score, and area under the curve (AUC) at 91.85%, 0.92, and 0.98, respectively. These are respectable values that qualify this ViT model, with weakly supervised training, as a suitable tool for a deep learning module in clinical model development using automated image patch extraction.
https://arxiv.org/abs/2604.13795
Semantic segmentation requires dense pixel-level annotations, which are costly and time-consuming to acquire. To address this, we present SeSAM, a framework that uses a foundational segmentation model, i.e. Segment Anything Model (SAM), with weak labels, including coarse masks, scribbles, and points. SAM, originally designed for instance-based segmentation, cannot be directly used for semantic segmentation tasks. In this work, we identify specific challenges faced by SAM and determine appropriate components to adapt it for class-based segmentation using weak labels. Specifically, SeSAM decomposes class masks into connected components, samples point prompts along object skeletons, selects SAM masks using weak-label coverage, and iteratively refines labels using pseudo-labels, enabling SAM-generated masks to be effectively used for semantic segmentation. Integrated with a semi-supervised learning framework, SeSAM balances ground-truth labels, SAM-based pseudo-labels, and high-confidence pseudo-labels, significantly improving segmentation quality. Extensive experiments across multiple benchmarks and weak annotation types show that SeSAM consistently outperforms weakly supervised baselines while substantially reducing annotation cost relative to fine supervision.
https://arxiv.org/abs/2604.11170
Semantic segmentation of 3D point cloud scenes is a crucial task for various applications. In real-world scenarios, training segmentation models often faces three concurrent forms of data insufficiency: scarcity of training scenes, scarcity of point-level annotations, and absence of 2D image sequences from which point clouds were reconstructed. Existing data-efficient algorithms typically address only one or two of these challenges, leaving the joint treatment of all three unexplored. This paper proposes a data-efficient training framework specifically designed to address the three forms of data insufficiency. Our proposed algorithm, called Point pseudo-Labeling via Open-Vocabulary Image Segmentation (PLOVIS), leverages an Open-Vocabulary Image Segmentation (OVIS) model as a pseudo label generator to compensate for the lack of training data. PLOVIS creates 2D images for pseudo-labeling directly from training 3D point clouds, eliminating the need for 2D image sequences. To mitigate the inherent noise and class imbalance in pseudo labels, we introduce a two-stage filtering of pseudo labels combined with a class-balanced memory bank for effective training. The two-stage filtering mechanism first removes low-confidence pseudo labels, then discards likely incorrect pseudo labels, thereby enhancing the quality of pseudo labels. Experiments on four benchmark datasets, i.e., ScanNet, S3DIS, Toronto3D, and Semantic3D, under realistic data-scarce conditions (a few tens of training 3D scenes, each annotated with only <100 3D points) demonstrate that PLOVIS consistently outperforms existing methods including standard fine-tuning strategies and state-of-the-art weakly supervised learning algorithms. Code will be made publicly available.
https://arxiv.org/abs/2604.11007
Modern vision-language models achieve strong performance in static perception, but remain limited in the complex spatiotemporal reasoning required for embodied, egocentric tasks. A major source of failure is their reliance on temporal priors learned from passive video data, which often leads to spatiotemporal hallucinations and poor generalization in dynamic environments. To address this, we present EgoTSR, a curriculum-based framework for learning task-oriented spatiotemporal reasoning. EgoTSR is built on the premise that embodied reasoning should evolve from explicit spatial understanding to internalized task-state assessment and finally to long-horizon planning. To support this paradigm, we construct EgoTSR-Data, a large-scale dataset comprising 46 million samples organized into three stages: Chain-of-Thought (CoT) supervision, weakly supervised tagging, and long-horizon sequences. Extensive experiments demonstrate that EgoTSR effectively eliminates chronological biases, achieving 92.4% accuracy on long-horizon logical reasoning tasks while maintaining high fine-grained perceptual precision, significantly outperforming existing open-source and closed-source state-of-the-art models.
https://arxiv.org/abs/2604.10517
High-quality Late Gadolinium Enhancement (LGE) MRI can be helpful for atrial fibrillation management, yet scan quality is frequently compromised by patient motion, irregular breathing, and suboptimal image acquisition timing. While Multiple Instance Learning (MIL) has emerged as a powerful tool for automated quality assessment under weak supervision, current state-of-the-art methods map localized visual evidence to a single, opaque global feature vector. This black box approach fails to provide actionable feedback on specific failure modes, obscuring whether a scan degrades due to motion blur, inadequate contrast, or a lack of anatomical context. In this paper, we propose Adversarial Concept-MIL (AC-MIL), a weakly supervised framework that decomposes global image quality into clinically defined radiological concepts using only volume-level supervision. To capture latent quality variations without entangling predefined concepts, our framework incorporates an unsupervised residual branch guided by an adversarial erasure mechanism to strictly prevent information leakage. Furthermore, we introduce a spatial diversity constraint that penalizes overlap between distinct concept attention maps, ensuring localized and interpretable feature extraction. Extensive experiments on a clinical dataset of atrial LGE-MRI volumes demonstrate that AC-MIL successfully opens the MIL black box, providing highly localized spatial concept maps that allow clinicians to pinpoint the specific causes of non-diagnostic scans. Crucially, our framework achieves this deep clinical transparency while maintaining highly competitive ordinal grading performance against existing baselines. Code to be released on acceptance.
https://arxiv.org/abs/2604.10303
Dense annotations, such as segmentation masks, are expensive and time-consuming to obtain, especially for 3D medical images where expert voxel-wise labeling is required. Weakly supervised approaches aim to address this limitation, but often rely on attribution-based methods that struggle to accurately capture small structures such as lung nodules. In this paper, we propose a weakly-supervised segmentation method for lung nodules by combining pretrained state-of-the-art rectified flow and predictor models in a plug-and-play manner. Our approach uses training-free guidance of a 3D rectified flow model, requiring only fine-tuning of the predictor using image-level labels and no retraining of the generative model. The proposed method produces improved-quality segmentations for two separate predictors, consistently detecting lung nodules of varying size and shapes. Experiments on LUNA16 demonstrate improvements over baseline methods, highlighting the potential of generative foundation models as tools for weakly supervised 3D medical image segmentation.
https://arxiv.org/abs/2604.08313
High-fidelity interactive digital assets are essential for embodied intelligence and robotic interaction, yet articulated objects remain challenging to reconstruct due to their complex structures and coupled geometry-motion relationships. Existing methods suffer from instability in geometry-motion joint optimization, while their generalization remains limited on complex multi-joint or out-of-distribution objects. To address these challenges, we propose GEAR, an EM-style alternating optimization framework that jointly models geometry and motion as interdependent components within a Gaussian Splatting representation. GEAR treats part segmentation as a latent variable and joint motion parameters as explicit variables, alternately refining them for improved convergence and geometric-motion consistency. To enhance part segmentation quality without sacrificing generalization, we leverage a vanilla 2D segmentation model to provide multi-view part priors, and employ a weakly supervised constraint to regularize the latent variable. Experiments on multiple benchmarks and our newly constructed dataset GEAR-Multi demonstrate that GEAR achieves state-of-the-art results in geometric reconstruction and motion parameters estimation, particularly on complex articulated objects with multiple movable parts.
https://arxiv.org/abs/2604.07728
In computational cytology, detecting malignancy on whole-slide images is difficult because malignant cells are morphologically diverse yet vanishingly rare amid a vast background of normal cells. Accurate detection of these extremely rare malignant cells remains challenging due to large class imbalance and limited annotations. Conventional weakly supervised approaches, such as multiple instance learning (MIL), often fail to generalize at the instance level, especially when the fraction of malignant cells (witness rate) is exceedingly low. In this study, we explore the use of one-class representation learning techniques for detecting malignant cells in low-witness-rate scenarios. These methods are trained exclusively on slide-negative patches, without requiring any instance-level supervision. Specifically, we evaluate two OCC approaches, DSVDD and DROC, and compare them with FS-SIL, WS-SIL, and the recent ItS2CLR method. The one-class methods learn compact representations of normality and detect deviations at test time. Experiments on a publicly available bone marrow cytomorphology dataset (TCIA) and an in-house oral cancer cytology dataset show that DSVDD achieves state-of-the-art performance in instance-level abnormality ranking, particularly in ultra-low witness-rate regimes ($\leq 1\%$) and, in some cases, even outperforming fully supervised learning, which is typically not a practical option in whole-slide cytology due to the infeasibility of exhaustive instance-level annotations. DROC is also competitive under extreme rarity, benefiting from distribution-augmented contrastive learning. These findings highlight one-class representation learning as a robust and interpretable superior choice to MIL for malignant cell detection under extreme rarity.
https://arxiv.org/abs/2604.07722
Mixture proportion estimation (MPE) aims to estimate class priors from unlabeled data. This task is a critical component in weakly supervised learning, such as PU learning, learning with label noise, and domain adaptation. Existing MPE methods rely on the \textit{irreducibility} assumption or its variant for identifiability. In this paper, we propose novel assumptions based on conditional independence (CI) given the class label, which ensure identifiability even when irreducibility does not hold. We develop method of moments estimators under these assumptions and analyze their asymptotic properties. Furthermore, we present weakly-supervised kernel tests to validate the CI assumptions, which are of independent interest in applications such as causal discovery and fairness evaluation. Empirically, we demonstrate the improved performance of our estimators compared with existing methods and that our tests successfully control both type I and type II errors.\label{key}
https://arxiv.org/abs/2604.07191
Weakly supervised semantic segmentation aims to achieve pixel-level predictions using image-level labels. Existing methods typically entangle semantic recognition and object localization, which often leads models to focus exclusively on sparse discriminative regions. Although foundation models show immense potential, many approaches still follow the tightly coupled optimization paradigm, struggling to effectively alleviate pseudo-label noise and often relying on time-consuming multi-stage retraining or unstable end-to-end joint optimization. To address the above challenges, we present ModuSeg, a training-free weakly supervised semantic segmentation framework centered on explicitly decoupling object discovery and semantic assignment. Specifically, we integrate a general mask proposer to extract geometric proposals with reliable boundaries, while leveraging semantic foundation models to construct an offline feature bank, transforming segmentation into a non-parametric feature retrieval process. Furthermore, we propose semantic boundary purification and soft-masked feature aggregation strategies to effectively mitigate boundary ambiguity and quantization errors, thereby extracting high-quality category prototypes. Extensive experiments demonstrate that the proposed decoupled architecture better preserves fine boundaries without parameter fine-tuning and achieves highly competitive performance on standard benchmark datasets. Code is available at this https URL.
https://arxiv.org/abs/2604.07021